miRTarCLIP

miR-3658
miR-3653-3p
miR-4670-3p
miR-298
miR-504-3p
miR-516b-5p
miR-518-5p
miR-3191-5p
miR-6764-3p/6824-3p

miR-122-5p
miR-326/330-5p
miR-216b-5p
Clusters
Ruler
3'UTR(9606)
Reads Info
Read Number : 2
Read Number : 2
Read Number : 2
Read Number : 2
Read Number : 2
Read Number : 2
Read Number : 2
Read Number : 2
Read Number : 2
Read Number : 4
Read Number : 2
Read Number : 2
Read Number : 2

                                                                                                                                                                                                               UUCU---UAA                                                                                                                               
                                                                                                                                                                                                               UUCU---UAA                                                                                                                               
                                                                                                                                                                                                                      UAA-CUUC                                                                                                                          
                                                                                                                                                                                                                          CUUCUGCA                                                                                                                      
                                                                                                                                                                                                                               GCACUCCA                                                                                                                 
                                                                                                                                                                                                                                  CUCCAGA                                                                                                               
                                                                                                                                                                                                                                   UCCAGAGA                                                                                                             
                                                                                                                                                                                                                                    CCAGAGA                                                                                                             
                                                                                                                                                                                                                                    CCAGAGA                                                                                                             

                                                                                                                                                                                                                                CACUCCA                                                                                                                 
                                                                                                                                                                                                                                    CCAGAGA                                                                                                             
                                                                                                                                                                                                                                      AGAGAUU                                                                                                           
                                                                                                                                                                            UU                              AUUUUCU   UAA CUUCUGCACUCCAG                                                                                                                
........281..........................................291....................................................................301..........311.................321..............................................331...........341.......351.......361.......371............381.......391.......................................................401...........
AUA----GAGGUUU-----UU-G-------------U----------------U-----GUUG--------------U-U-----------------------------UUU------------UU--AAG-GAUAUAUUUUCA---------GU-AU---------GAAGGUU------------------------------AUUUUCU---UAA-CUUCUGCACUCCAGAGAUUUCUAUUUUGUAGUACCUUCAAU-A----AUAUAUCAACU------------AU-AU-----AU------------------------U------AAAAAA----GCA

                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTGCACTCCAG 2                                                                                                              
                                                                                                                                                                            TT                              ATTTTCT   TAA CTNCTGCACTCCAG 2                                                                                                              
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCT 2                                                                                                                       
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTGCACTCCAG 2                                                                                                              
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTGCACTCCA 2                                                                                                               
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTGCACTC 2                                                                                                                 
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTGCACTCCAG 2                                                                                                              
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTGCACTCCAGA 2                                                                                                             
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTGCACTCCAGT 2                                                                                                             
                                                                                                                                                                            TT                              ATTTTCT   TAA CTTCTG 4                                                                                                                      
                                                                                                                                                                             T                              ATTTTAT   TAA CTTCT 2                                                                                                                       
                                                                                                                                                                             T                              ATTTTCT   TAA CTTCTGCACTCCA 2                                                                                                               
                                                                                                                                                                                                               TTCT   TAA CTTCTGCACTCCAG 2

NonConserved (7mer-m8) (NULL)
NonConserved (7mer-1a) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (8mer) (NULL)
NonConserved (8mer) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (8mer) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-1a) (NULL)

Conserved (7mer-1a) (0.00)
Conserved (7mer-1a) (NULL)
Conserved (7mer-m8) (0.00)

Conserved

miRNA Name	seed match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-122-5p	1	345	351	NULL	NULL	NULL	-0.047	73	-0.047	61

Nonconserved

miRNA Name	seed_match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-216b-5p	2	351	357	NULL	NULL	NULL	-0.060	81	-0.060	71
hsa-miR-518c-5p	3	348	355	NULL	NULL	NULL	-0.199	95	-0.199	93
hsa-miR-326	1	349	355	NULL	NULL	NULL	-0.095	81	-0.095	74
hsa-miR-330-5p	1	349	355	NULL	NULL	NULL	-0.098	82	-0.098	76
hsa-miR-6764-3p	1	349	355	NULL	NULL	NULL	-0.068	83	-0.068	77
hsa-miR-6824-3p	1	349	355	NULL	NULL	NULL	-0.080	86	-0.080	81
hsa-miR-4670-3p	2	336	342	NULL	NULL	NULL	-0.071	78	-0.071	67
hsa-miR-298	3	339	346	NULL	NULL	NULL	-0.236	96	-0.236	95
hsa-miR-504-3p	3	344	351	NULL	NULL	NULL	-0.273	97	-0.273	95
hsa-miR-3653-3p	1	332	338	NULL	NULL	NULL	-0.010	62	-0.010	42
hsa-miR-3191-5p	2	349	355	NULL	NULL	NULL	-0.126	88	-0.126	84
hsa-miR-516b-5p	2	347	353	NULL	NULL	NULL	-0.173	89	-0.173	85
hsa-miR-3658	2	332	338	NULL	NULL	NULL	-0.020	65	-0.020	40