miRTarCLIP

miR-5705
miR-561-3p
miR-4519

miR-15-5p/16-5p/195-5p/424-5p/...
Clusters
Ruler
3'UTR(9606)
Reads Info
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 2
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 2

                                                  CCGAAAC                                                                                     
                                                     AAACUUU                                                                                  
                                                            CACUGCU                                                                           

                                                               UGCUGCU                                                                        
                                                       ACUUUCACUGCUGCUUCU                                                                     
......5961...........5971......5981......5991......6001......6011......6021.........6031......6041........6051......6061.......6071......6081......
CUCAAUCUAU----AU-ACAGCUGUGCCAAAAUGAAGGAUACCUGCCUCUCCGAAACUUUCACUGCUGCUUCUGUC---AUUGUUCACUUGUCAGAUA--AAAUUUUAUUAUCUCAGGA-UGCAAAUUUAAAAUAAAGUGUA

                                                     AAACTTTCACTGCTGCTTC 1                                                                    
                                                     AAACTTTCACAGCTGCTTC 1                                                                    
                                                      ATCTTTCACTGCTGCTTCT 1                                                                   
                                                       ACTTTCGCTGCTGCTTCT 2                                                                   
                                                       CCTTTCACTGCTGCTTC 1                                                                    
                                                        CTTTCACTGCTGCTTCT 1                                                                   
                                                        CTTTCACTGCTGCTTCT 1                                                                   
                                                        CTTTCAATGCTGCTTC 1                                                                    
                                                        TTTTCACTGCTGCTTCT 1                                                                   
                                                         TTTCACTGCTGCTTCT 1                                                                   
                                                         TTTAACTGCTGCTTC 2

NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)

Conserved (7mer-m8) (0.67)

Conserved

miRNA Name	seed match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-15b-5p	2	6013	6019	NULL	NULL	NULL	-0.081	76	-0.280	94
hsa-miR-16-5p	2	6013	6019	NULL	NULL	NULL	-0.081	77	-0.280	94
hsa-miR-195-5p	2	6013	6019	NULL	NULL	NULL	-0.084	77	-0.291	95
hsa-miR-424-5p	2	6013	6019	NULL	NULL	NULL	-0.080	77	-0.277	94
hsa-miR-497-5p	2	6013	6019	NULL	NULL	NULL	-0.077	76	-0.266	94
hsa-miR-15a-5p	2	6013	6019	NULL	NULL	NULL	-0.081	76	-0.280	94
hsa-miR-6838-5p	2	6013	6019	NULL	NULL	NULL	-0.081	76	-0.281	94

Nonconserved

miRNA Name	seed_match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-561-3p	2	6003	6009	NULL	NULL	NULL	-0.006	57	-0.020	54
hsa-miR-4519	2	6010	6016	NULL	NULL	NULL	-0.050	71	-0.170	87
hsa-miR-5705	2	6000	6006	NULL	NULL	NULL	-0.089	64	-0.310	87