miRTarCLIP

miR-3662
miR-3163
miR-451b
miR-4524-5p
miR-646
miR-374b-3p

miR-15-5p/16-5p/195-5p/424-5p/...
miR-503-5p
Clusters
Ruler
3'UTR(9606)
Reads Info
Read Number : 1
Read Number : 1
Read Number : 2
Read Number : 1

                                                                  CA------U---------------U--------UUA                                                                                                                    
                                                                   A------U---------------U--------UUA-U                                                                                                                  
                                                                                                            UCUUGCU                                                                                                       
                                                                                                                GCUGC-U-A--A                                                                                              
                                                                                                                GCUGC-U-A                                                                                                 
                                                                                                                 CUGC-U-A--AA                                                                                             

                                                                                                               UGCUGC-U-A                                                                                                 
                                                                                                                GCUGC-U-A                                                                                                 
                                                                                                    UA UU UUUCUUGCUGC                                                                                                     
.....221..........231................241.......251...............261......................................271.......281...........291........301.........311..........321..........331.......341.............................
-CCCGGGC---GGGUGACCCA--GCAC---GG----UCCCUCUUGGAAUUGGA-U-------UCGCCA------U---------------U--------UUA-UU-UUUCUUGCUGC-U-A--AAUCACCGAG-CCCGGAAGAU-UAGAGAG-U-UUUA-UUUC-UGGGA--UU-CCUGUAGACACACCC------------ACCC----------AC

                                                                 CCA      T               T        TTA TT TTTCTTGCTGC   1                                                                                                 
                                                                 CCA      T               T        TTA TT TTTCTTGCTGC T A   1                                                                                             
                                                                 CCA      T               T        TTA TT TTTCTTGCTGC T A  AAT 2                                                                                          
                                                                                                    TA TT TTTCTTGCTGC T A  AAT 1

NonConserved (7mer-1a) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (8mer) (NULL)
NonConserved (7mer-1a) (NULL)
NonConserved (8mer) (NULL)

Conserved (8mer) (0.82)
Conserved (7mer-1a) (0.70)

Conserved

miRNA Name	seed match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-15b-5p	3	276	283	NULL	NULL	NULL	-0.511	99	-0.512	99
hsa-miR-6838-5p	3	276	283	NULL	NULL	NULL	-0.529	99	-0.530	99
hsa-miR-497-5p	3	276	283	NULL	NULL	NULL	-0.516	99	-0.517	99
hsa-miR-195-5p	3	276	283	NULL	NULL	NULL	-0.551	99	-0.552	99
hsa-miR-16-5p	3	276	283	NULL	NULL	NULL	-0.551	99	-0.552	99
hsa-miR-15a-5p	3	276	283	NULL	NULL	NULL	-0.519	99	-0.520	99
hsa-miR-424-5p	3	276	283	NULL	NULL	NULL	-0.532	99	-0.533	99
hsa-miR-503-5p	1	277	283	NULL	NULL	NULL	-0.311	99	-0.312	98

Nonconserved

miRNA Name	seed_match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-3662	1	262	268	NULL	NULL	NULL	-0.010	70	-0.010	47
hsa-miR-451b	2	273	279	NULL	NULL	NULL	-0.189	95	-0.189	93
hsa-miR-646	1	277	283	NULL	NULL	NULL	-0.154	92	-0.154	88
hsa-miR-3163	2	263	269	NULL	NULL	NULL	-0.020	84	-0.020	65
hsa-miR-4524a-5p	3	277	284	NULL	NULL	NULL	-0.491	99	-0.492	98
hsa-miR-4524b-5p	3	277	284	NULL	NULL	NULL	-0.491	99	-0.492	98
hsa-miR-374b-3p	3	278	285	NULL	NULL	NULL	-0.282	97	-0.282	96