miRTarCLIP

miR-4683
miR-6888-5p
miR-4428
miR-6124
miR-3148
miR-875-3p
miR-383-3p
miR-3944-5p
miR-143-5p
miR-648
miR-574-5p
miR-4433b-3p
miR-4433a-3p
miR-6715a-3p

miR-383-5p.2
miR-103-3p/107
miR-122-5p
miR-665
Clusters
Ruler
3'UTR(9606)
Reads Info
Read Number : 3
Read Number : 1
Read Number : 3
Read Number : 18
Read Number : 19
Read Number : 1
Read Number : 4
Read Number : 2
Read Number : 1
Read Number : 2
Read Number : 2
Read Number : 1
Read Number : 1
Read Number : 1

                                                                                           GAUCUCC                                                                                                                                
                                                                                            AUCUCC--U                                                                                                                             
                                                                                             UCUCC--UU                                                                                                                            
                                                                                                 C--UUU-U--CC-A                                                                                                                   
                                                                                                    UUU-U--CC-A                                                                                                                   
                                                                                                     UU-U--CC-AG                                                                                                                  
                                                                                                              AGUGCU-G                                                                                                            
                                                                                                                 GCU-GCACA                                                                                                        
                                                                                                                  CU-GCACA                                                                                                        
                                                                                                                     GCACA--------C--U                                                                                            
                                                                                                                      CACA--------C--U-------C                                                                                    
                                                                                                                        CA--------C--U-------CCU                                                                                  
                                                                                                                         A--------C--U-------CCUG                                                                                 
                                                                                                                                               UG---GUUUG                                                                         

                                                                                         CUGAUCU                                                                                                                                  
                                                                                                                UGCU-GCA                                                                                                          
                                                                                                                       ACA--------C--U-------CC                                                                                   
                                                                                                                                  C--U-------CCUG---G                                                                             
                                                                                            AUCUCC  UUU U  CC AGUGCU GCACA        C  U       CCUG                                                                                 
.911........................921.............931...............941................951.........961............971.........981...........................991.......................1001............1011.........1021.......1031......
GCUGUAAA-A--------A--------CU--A----ACGGCUUCUCUGA-------UAUUU-AUUGU---A------AGUUUU-A-GUACUGAUCUCC--UUU-U--CC-AGUGCU-GCACA--------C--U-------CCUG---GUUUGGA-------A--C-UUU------A-----A-UAGCGUUGCAAC-G-A-AAUCCUAU-AUCCAGUUUCCUGUAA

                                                                                            ATCTCC  TTT T  CC AGTGCT GCACA        C  T       C 3                                                                                  
                                                                                            ATCTCC  TTT T  CC AGTGCT GCACA        C  T       CCTC   G 1                                                                           
                                                                                            ATCTCC  TTT T  CC AGTGCT GCACA        C  T       CCTG    3                                                                            
                                                                                            ATCTCC  TTT T  CC AGTGCT GCACA        C  T       CCT    18                                                                            
                                                                                            ATCTCC  TTT T  CC AGTGCT GCACA        C  T       CC 1   9                                                                             
                                                                                             TCTCC  TTT T  CC AGTGCT GCACA        C  T       CCTG    1                                                                            
                                                                                             TCTCC  TTT T  CC AGTGCT GCACA        C  T       CCT    4                                                                             
                                                                                              CTCC  TTT T  CC AGTGCT GCACA        C  T       CCT    2                                                                             
                                                                                              CTCC  TTT T  CC AGTGCT GCACA        C  T       CC 1                                                                                 
                                                                                                     TT T  CC AGAGCT GCACA        C  T       CCT    2                                                                             
                                                                                                      T T  CC AGTGCT GCACA        C  T       CCTG    2                                                                            
                                                                                                        T  CC AGTGCT GCACA        C  T       CCT    1                                                                             
                                                                                                            C AGTGCT GCACA        C  T       CCT    1                                                                             
                                                                                                              AGTACT GCACA        C  T       CCT    1

NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (8mer) (NULL)
NonConserved (7mer-1a) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (8mer) (NULL)
NonConserved (7mer-1a) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)

Conserved (7mer-m8) (0.07)
Conserved (7mer-1a) (0.03)
Conserved (7mer-m8) (0.16)
Conserved (7mer-m8) (NULL)

Conserved

miRNA Name	seed match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-122-5p	2	980	986	NULL	NULL	NULL	-0.119	89	-0.119	84

Nonconserved

miRNA Name	seed_match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-4428	2	961	967	NULL	NULL	NULL	-0.100	84	-0.100	77
hsa-miR-383-5p.2	2	957	963	NULL	NULL	NULL	-0.129	91	-0.129	86
hsa-miR-6888-5p	2	960	966	NULL	NULL	NULL	-0.114	92	-0.114	89
hsa-miR-4433b-3p	2	981	987	NULL	NULL	NULL	-0.106	85	-0.106	78
hsa-miR-648	2	978	984	NULL	NULL	NULL	-0.190	93	-0.190	90
hsa-miR-6715a-3p	2	987	993	NULL	NULL	NULL	-0.047	72	-0.047	58
hsa-miR-383-3p	2	972	978	NULL	NULL	NULL	-0.021	66	-0.021	54
hsa-miR-4433a-3p	2	982	988	NULL	NULL	NULL	-0.034	79	-0.034	71
hsa-miR-665	2	983	989	NULL	NULL	NULL	-0.151	90	-0.151	86
hsa-miR-875-3p	2	967	973	NULL	NULL	NULL	-0.041	72	-0.041	60
hsa-miR-574-5p	2	979	985	NULL	NULL	NULL	-0.068	64	-0.068	50
hsa-miR-103a-3p	1	974	980	NULL	NULL	NULL	-0.100	83	-0.100	76
hsa-miR-107	1	974	980	NULL	NULL	NULL	-0.100	83	-0.100	76
hsa-miR-3148	1	966	972	NULL	NULL	NULL	-0.010	49	-0.010	25
hsa-miR-6124	3	965	972	NULL	NULL	NULL	-0.030	89	-0.030	83
hsa-miR-4683	2	959	965	NULL	NULL	NULL	-0.245	96	-0.245	94
hsa-miR-3944-5p	3	975	982	NULL	NULL	NULL	-0.251	96	-0.251	94
hsa-miR-143-5p	1	976	982	NULL	NULL	NULL	-0.010	54	-0.010	28