miRTarCLIP

miR-3125/3916/6859-5p
miR-4428
miR-545-3p
miR-6792-5p
miR-4503
miR-125b-2-3p
miR-5582-5p

miR-9-5p
miR-15-5p/16-5p/195-5p/424-5p/...
miR-124-3p.1
Clusters
Ruler
3'UTR(9606)
Reads Info
Read Number : 7
Read Number : 4
Read Number : 1
Read Number : 3
Read Number : 17
Read Number : 1
Read Number : 1
Read Number : 3
Read Number : 2
Read Number : 27
Read Number : 2
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 1
Read Number : 5
Read Number : 2
Read Number : 5
Read Number : 3
Read Number : 5
Read Number : 2
Read Number : 5

                                                            UUCCU-CU                                                                                                                                
                                                                U-CUCCUU                                                                                                                            
                                                                      UU---UGCUG                                                                                                                    
                                                                             CUGCUUAA                                                                                                               
                                                                              UGCUUAAA                                                                                                              
                                                                                     ACUU-GUG                                                                                                       
                                                                                        U-GUGCCU                                                                                                    

                                                  CCAAAGA                                                                                                                                           
                                                                           UGCUGCU                                                                                                                  
                                                                                          GUGCCUUA                                                                                                  
                                                        A UUUUCCU CUCCUU   UGCUGCUUAAACUU G                                                                                                         
........5761........5771.........5781......5791......5801.......5811..........5821......5831.......5841..............5851......5861.........................................5871................5881......
AACACUG-CCUG--UCCCCCACA---GCAAAUAUUGAUGCUGUUGGUCAGCCAAAGA-UUUUCCU-CUCCUU---UGCUGCUUAAACUU-GUGCCUUAAUAUU---GUACAU-----AAUAAAUGGAUA---------------------AAAU-GG----C---------AAAA--UGA--------CUCUUUUC

                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT G 7                                                                                                       
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT  4                                                                                                        
                                                        A TTTTCCT CTCCTT   AGCTGCTTAAACTT G 1                                                                                                       
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT G 3                                                                                                       
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT G 17                                                                                                      
                                                        G TTTTCCT CTCCTT   TGCTGCTTAAACTT G 1                                                                                                       
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT  1                                                                                                        
                                                        A TTTTCCT CTCCTT   TGCTGCTT 3                                                                                                               
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT G 2                                                                                                       
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT G 27                                                                                                      
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT  2                                                                                                        
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACT  1                                                                                                         
                                                        A TTTTCCT CTCCTT   TGCTGCTTAAACTT G 1                                                                                                       
                                                          TTTTCCT CTCCTT   TGCTGCTTAAACTT  1                                                                                                        
                                                          TTTTCCT CTCCTT   TGCTGCTTAAACTT G 1                                                                                                       
                                                          TTTTCCT CTCCTT   TGCTGCTTAAACT  1                                                                                                         
                                                          TTTTCCT CTCCTT   TGCTGCTTAAACTT G 5                                                                                                       
                                                          TTTTCCT CTCCTT   TGCTGCTTAAACT  2                                                                                                         
                                                            TTCCT CTCCTT   TGCTGCTTAAACTT G 5                                                                                                       
                                                             TCCT CTCCTT   TGCTGCTTAAACTT G 3                                                                                                       
                                                                  CTCCTT   TGCTGCTTAAAC 5                                                                                                           
                                                                   TCCTT   TGCTGCTTAAACT  2                                                                                                         
                                                                   TCCTT   TGCTGCTTAAACTT  5

NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (8mer) (NULL)
NonConserved (8mer) (NULL)
NonConserved (7mer-m8) (NULL)
NonConserved (7mer-m8) (NULL)

Conserved (7mer-1a) (0.83)
Conserved (7mer-m8) (0.77)
Conserved (8mer) (0.99)

Conserved

miRNA Name	seed match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-9-5p	1	5798	5804	NULL	NULL	NULL	-0.054	81	-0.083	82
hsa-miR-15a-5p	2	5818	5824	NULL	NULL	NULL	-0.200	91	-0.319	96
hsa-miR-497-5p	2	5818	5824	NULL	NULL	NULL	-0.191	91	-0.305	96
hsa-miR-195-5p	2	5818	5824	NULL	NULL	NULL	-0.186	90	-0.297	95
hsa-miR-424-5p	2	5818	5824	NULL	NULL	NULL	-0.178	89	-0.283	94
hsa-miR-16-5p	2	5818	5824	NULL	NULL	NULL	-0.186	90	-0.297	95
hsa-miR-15b-5p	2	5818	5824	NULL	NULL	NULL	-0.200	91	-0.319	96
hsa-miR-6838-5p	2	5818	5824	NULL	NULL	NULL	-0.200	91	-0.320	96
hsa-miR-124-3p.1	3	5832	5839	NULL	NULL	NULL	-0.271	95	-0.439	99

Nonconserved

miRNA Name	seed_match	mirna start	mirna end	3' pairing contribution	local AU contribution	position contribution	TA contribution	SPS contribution	context+ score	context+ score percentile
hsa-miR-4428	2	5811	5817	NULL	NULL	NULL	-0.048	70	-0.075	70
hsa-miR-3125	2	5807	5813	NULL	NULL	NULL	-0.066	77	-0.103	79
hsa-miR-3916	2	5807	5813	NULL	NULL	NULL	-0.088	82	-0.137	85
hsa-miR-6859-5p	2	5807	5813	NULL	NULL	NULL	-0.034	76	-0.052	76
hsa-miR-5582-5p	2	5831	5837	NULL	NULL	NULL	-0.182	91	-0.290	96
hsa-miR-125b-2-3p	2	5828	5834	NULL	NULL	NULL	-0.077	87	-0.120	89
hsa-miR-545-3p	2	5816	5822	NULL	NULL	NULL	-0.013	47	-0.020	31
hsa-miR-6792-5p	3	5820	5827	NULL	NULL	NULL	-0.108	91	-0.170	94
hsa-miR-4503	3	5821	5828	NULL	NULL	NULL	-0.038	61	-0.058	52