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miRTarBase - #MIRT727268 -
pre-miRNA Information
pre-miRNA hsa-mir-15a   
Genomic Coordinates chr13: 50049119 - 50049201
Synonyms MIRN15A, hsa-mir-15a, miRNA15A, MIR15A
Description Homo sapiens miR-15a stem-loop
Comment Reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-15a-5p
Sequence 14| UAGCAGCACAUAAUGGUUUGUG |35
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1355089203 8 dbSNP
rs753467375 11 dbSNP
rs923737993 12 dbSNP
rs766120172 20 dbSNP
rs1359939022 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LRRC57   
Synonyms -
Description leucine rich repeat containing 57
Transcript NM_153260   
Expression
Putative miRNA Targets on LRRC57
3'UTR of LRRC57
(miRNA target sites are highlighted)		 
>LRRC57|NM_153260|3'UTR
   1 AGTTCTCCAGGACTATGGAAACCTTACAGGATACTGACTTAGAACCTCTGTTGGAATGTGGCTGAGTCAAAGCCTCCTGT
  81 TGTTGTTAGGGGTATCTACAGTAAGGAGATGATACTTCAGGAGATTATATTTCACTCAATGATCTTTTCTCATTTCAGGG
 161 CTCTTCTCAAATAAGCTAAAAGAAAAAGGATCAGGAGACAGGAAAAGTCTTCCGTTTTGAGTCATGAGTAGGGCAATAGA
 241 CAAGGTTCTCTTCAAAACCATCATTAGTTTGGCTTTAAGAAACCAGTAGCTAGCTGCTATTTATATGGTGAGGGGGTGCT
 321 GCCTGGTAACAGAATAGCTCCACACCACAGCTTGAGATTTTGTTTAGTTTCACTGTGTGAGCTTTCATAAAGTCTGTTGC
 401 CATTCCATCTCTGTGTTAACACTTCATATTTTTATGAAATTCAGATAATTTGTGAGAGGCTGGCATGGATCTAAGGATTT
 481 ATTATTTTTATTCTAGTCCATCAGTTCAGTCGCAGTTTTTATACTAGGACTTTAGGATGTACATAAATGTGTGACTGTTT
 561 GTCTTGATTAAAAGTGCACTTTGGCCTGGGCATGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCGGGT
 641 GGCTCACTTGAGGCTAGGAGTTCAAGACTAGCGTGGCCAACATGAGGAAACCCTGTCTCTACTAAAAATACAAAAATTAG
 721 CTGGGTGTGTTGGTGCATGCTTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGA
 801 GGTTGCAGTGAGCCGAGATTATGCCACTGTACTCCAGCGTGGGTGACAGAGTGAGACTCTGTCTCAAATTAAAAAAATAA
 881 AAAATAATTTTTTTTTTTTAAAGTACGCTTTGTTGGCTGGGCACGGCGACTCACGCCTGTAATCCCAGCACATTGGGAGG
 961 CCAAGGCAGGCAGATCACGAGGTTAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTGAAAATAC
1041 AAAAATTAGCTGGGCGTGGTGGTGGGTACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCA
1121 GGAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCATTGCACTCCGACTCTGGGCAACAGAGCAAGACTCTGTCTCGGGGG
1201 AAACAAAAAAAAAGTGTGCTTTGTCAAGAGAAGCACCAGCAGACCTCTAAGAACTGCTCTCTAAGGCTGCGGTAGCAAAT
1281 TATCTACTATTGCAGGTGCCTTATTGGTAGAGGGCTCTGAAGAGCCAAAACTGTATATGCAACACTTGTAAGATAAAAGG
1361 GACTTTAATAATCAAGATTTTCTTGAAGATTTGTTAGAAATAATGTCTTATTTCTGGTAACCTTTCCCTTTTTGTATTTA
1441 TAACTCTACTAACCAAATTACCTATCAATAAACCATTACTATAATATTTTAAAACAACCTATGTTTATCAAGCTTACTCT
1521 CTGAGTGACAGAATATACTAAATAAAGAATTTTTTAATGAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1 
miRNA  3' gugUUUGGUAAUACA-CGACGAu 5'
             |||||| ||  | |||||| 
Target 5' aagAAACCAGTAGCTAGCTGCTa 3'
 		277 - 299 139.00 -15.12
2 
miRNA  3' guGUUUGGUAAUAC-ACGACGAu 5'
            |||| | |  || ||:||:| 
Target 5' gtCAAAGCCTCCTGTTGTTGTTa 3'
 		66 - 88 128.00 -10.90
3 
miRNA  3' guguuugguaauaCACGACGau 5'
                       |||||||  
Target 5' atatggtgaggggGTGCTGCct 3'
 		303 - 324 125.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30133011 13 COSMIC
COSN32052963 36 COSMIC
COSN32052775 48 COSMIC
COSN30134711 57 COSMIC
COSN31552373 61 COSMIC
COSN30176102 85 COSMIC
COSN31522861 109 COSMIC
COSN30137142 174 COSMIC
COSN30535345 175 COSMIC
COSN31605300 243 COSMIC
COSN31961073 512 COSMIC
COSN27503299 888 COSMIC
COSN20586856 899 COSMIC
COSN9624898 905 COSMIC
COSN30369339 1109 COSMIC
COSN31523728 1167 COSMIC
COSN29752526 1205 COSMIC
COSN26581008 1228 COSMIC
COSN25834960 1286 COSMIC
COSN24305110 1293 COSMIC
COSN6544205 1353 COSMIC
COSN20932294 1397 COSMIC
COSN9624897 1436 COSMIC
COSN16117721 1449 COSMIC
COSN28478812 1479 COSMIC
COSN30176053 1523 COSMIC
COSN31489350 1547 COSMIC
COSN22232043 1687 COSMIC
COSN25813363 1784 COSMIC
COSN24004935 2211 COSMIC
COSN23888833 2220 COSMIC
COSN23888832 2223 COSMIC
COSN23890600 2228 COSMIC
COSN27725442 2401 COSMIC
COSN27653446 2808 COSMIC
COSN23057250 3056 COSMIC
COSN17050561 4185 COSMIC
COSN29745153 4584 COSMIC
COSN1176796 4827 COSMIC
COSN1176795 5136 COSMIC
COSN17328353 5353 COSMIC
COSN5212562 5532 COSMIC
COSN9624896 5629 COSMIC
COSN19320554 5675 COSMIC
COSN5397279 5971 COSMIC
COSN22992788 6038 COSMIC
COSN26431164 6163 COSMIC
COSN7045263 6219 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs759407926 1 dbSNP
rs565101230 6 dbSNP
rs765534296 9 dbSNP
rs1004211759 15 dbSNP
rs887067891 16 dbSNP
rs1187683267 17 dbSNP
rs762167676 20 dbSNP
rs776850323 23 dbSNP
rs768842946 24 dbSNP
rs747418947 35 dbSNP
rs920216609 39 dbSNP
rs776073057 42 dbSNP
rs1196908180 45 dbSNP
rs1157782463 48 dbSNP
rs1269877709 50 dbSNP
rs971765424 53 dbSNP
rs1421306216 54 dbSNP
rs1280489728 57 dbSNP
rs1048480052 68 dbSNP
rs1373906306 74 dbSNP
rs545119902 78 dbSNP
rs1338890984 92 dbSNP
rs927733971 95 dbSNP
rs1342779062 100 dbSNP
rs981881723 119 dbSNP
rs1279501544 122 dbSNP
rs931356105 123 dbSNP
rs763878175 139 dbSNP
rs989372442 144 dbSNP
rs1415496200 147 dbSNP
rs1039877198 152 dbSNP
rs1346760794 157 dbSNP
rs944299792 161 dbSNP
rs572951232 167 dbSNP
rs1359913902 168 dbSNP
rs1033391427 175 dbSNP
rs998857124 178 dbSNP
rs1191557639 183 dbSNP
rs912806362 185 dbSNP
rs903220081 191 dbSNP
rs553099244 199 dbSNP
rs955736566 203 dbSNP
rs924239294 204 dbSNP
rs1408298167 205 dbSNP
rs889261492 206 dbSNP
rs61368952 207 dbSNP
rs1449432436 208 dbSNP
rs968417153 213 dbSNP
rs770070921 214 dbSNP
rs995018136 217 dbSNP
rs34359922 225 dbSNP
rs1012692901 226 dbSNP
rs959984164 233 dbSNP
rs1258600909 236 dbSNP
rs1459074622 237 dbSNP
rs1035612242 242 dbSNP
rs1004502614 243 dbSNP
rs1252073509 245 dbSNP
rs113153798 256 dbSNP
rs776554993 288 dbSNP
rs1199786810 294 dbSNP
rs1369872230 299 dbSNP
rs1188163197 306 dbSNP
rs1474448660 310 dbSNP
rs1170118684 330 dbSNP
rs887126528 331 dbSNP
rs1048849659 334 dbSNP
rs1324480575 340 dbSNP
rs1260323590 351 dbSNP
rs1215169599 353 dbSNP
rs1390397960 355 dbSNP
rs769249905 362 dbSNP
rs1449213876 377 dbSNP
rs1387734842 389 dbSNP
rs1285441441 390 dbSNP
rs1302906072 395 dbSNP
rs1228139826 397 dbSNP
rs995612861 407 dbSNP
rs1278342209 408 dbSNP
rs1319393024 409 dbSNP
rs1211678485 413 dbSNP
rs554828494 414 dbSNP
rs1264814034 420 dbSNP
rs1295360016 444 dbSNP
rs1234054793 445 dbSNP
rs1340021885 459 dbSNP
rs537681293 475 dbSNP
rs899905433 481 dbSNP
rs1345684689 484 dbSNP
rs1193031978 490 dbSNP
rs1424348387 500 dbSNP
rs1039929450 502 dbSNP
rs1163346817 511 dbSNP
rs569090570 512 dbSNP
rs558759285 519 dbSNP
rs1295706943 527 dbSNP
rs891250210 528 dbSNP
rs1382310212 534 dbSNP
rs1052710939 536 dbSNP
rs75827028 538 dbSNP
rs566532502 549 dbSNP
rs1341780833 550 dbSNP
rs546319902 560 dbSNP
rs1311877472 563 dbSNP
rs1322304224 574 dbSNP
rs1246696515 579 dbSNP
rs1258811431 583 dbSNP
rs924320882 586 dbSNP
rs1165203057 595 dbSNP
rs1487844079 598 dbSNP
rs1477288978 601 dbSNP
rs1420900941 604 dbSNP
rs1195172757 608 dbSNP
rs1475432072 616 dbSNP
rs923876385 617 dbSNP
rs183910835 620 dbSNP
rs1243220476 623 dbSNP
rs1256041090 629 dbSNP
rs978380825 637 dbSNP
rs1221398634 642 dbSNP
rs1167348046 644 dbSNP
rs567897328 648 dbSNP
rs978435493 664 dbSNP
rs1419501651 669 dbSNP
rs1158835846 671 dbSNP
rs1450239331 672 dbSNP
rs967389405 673 dbSNP
rs947169323 680 dbSNP
rs8042618 682 dbSNP
rs1008899998 684 dbSNP
rs555038149 686 dbSNP
rs565140420 692 dbSNP
rs778568726 695 dbSNP
rs1035901100 701 dbSNP
rs1240645999 708 dbSNP
rs1286976023 717 dbSNP
rs756854633 719 dbSNP
rs1356183255 721 dbSNP
rs1208095835 725 dbSNP
rs1255555025 730 dbSNP
rs1483623164 732 dbSNP
rs545154590 733 dbSNP
rs1216438287 736 dbSNP
rs1362696897 738 dbSNP
rs1236917437 740 dbSNP
rs1274198199 752 dbSNP
rs1179706704 756 dbSNP
rs1381762282 757 dbSNP
rs982737143 758 dbSNP
rs995014423 769 dbSNP
rs1372999686 780 dbSNP
rs528600576 781 dbSNP
rs1359182028 788 dbSNP
rs899353593 796 dbSNP
rs1296344266 797 dbSNP
rs1376126134 798 dbSNP
rs1311259797 802 dbSNP
rs1379392868 808 dbSNP
rs1217623957 810 dbSNP
rs539952487 814 dbSNP
rs1312805647 819 dbSNP
rs1212385831 820 dbSNP
rs1256689357 822 dbSNP
rs1397712463 827 dbSNP
rs1172309316 833 dbSNP
rs1005559276 834 dbSNP
rs189928959 838 dbSNP
rs1240339024 839 dbSNP
rs186703343 840 dbSNP
rs1410054647 845 dbSNP
rs1423772404 846 dbSNP
rs576679330 849 dbSNP
rs1425472768 851 dbSNP
rs1434369992 862 dbSNP
rs1477316399 868 dbSNP
rs1167769486 870 dbSNP
rs546185886 871 dbSNP
rs1466137231 879 dbSNP
rs80176519 884 dbSNP
rs995498395 886 dbSNP
rs182797393 887 dbSNP
rs115365491 888 dbSNP
rs1008283842 889 dbSNP
rs916324535 890 dbSNP
rs891308420 899 dbSNP
rs113416544 900 dbSNP
rs1221000535 900 dbSNP
rs556146024 900 dbSNP
rs544020950 906 dbSNP
rs1206820702 907 dbSNP
rs575563253 908 dbSNP
rs573457775 911 dbSNP
rs538829555 912 dbSNP
rs911861286 916 dbSNP
rs1489291931 924 dbSNP
rs566496597 925 dbSNP
rs953419524 927 dbSNP
rs767501269 928 dbSNP
rs991211109 932 dbSNP
rs938405824 934 dbSNP
rs553012412 935 dbSNP
rs1324031398 955 dbSNP
rs1442473006 957 dbSNP
rs1350678548 960 dbSNP
rs1438789408 962 dbSNP
rs983007811 963 dbSNP
rs1296595946 969 dbSNP
rs190235303 974 dbSNP
rs1026901121 976 dbSNP
rs567274158 978 dbSNP
rs1280617711 979 dbSNP
rs964048466 981 dbSNP
rs572766133 982 dbSNP
rs1291124167 984 dbSNP
rs1323884488 986 dbSNP
rs1008330415 987 dbSNP
rs1174763649 988 dbSNP
rs765607566 992 dbSNP
rs891189240 993 dbSNP
rs1472463046 999 dbSNP
rs1031199223 1016 dbSNP
rs1000097704 1021 dbSNP
rs904147196 1025 dbSNP
rs894834948 1026 dbSNP
rs1400671260 1032 dbSNP
rs1043961886 1033 dbSNP
rs555055385 1040 dbSNP
rs1012422775 1042 dbSNP
rs1237027691 1043 dbSNP
rs1208148151 1046 dbSNP
rs1350079426 1047 dbSNP
rs1280972540 1049 dbSNP
rs894163013 1053 dbSNP
rs533682310 1055 dbSNP
rs938474074 1056 dbSNP
rs531118705 1059 dbSNP
rs1354043790 1065 dbSNP
rs1218158815 1067 dbSNP
rs1224038796 1068 dbSNP
rs1377952830 1069 dbSNP
rs1441345416 1069 dbSNP
rs1300674340 1070 dbSNP
rs1416117909 1072 dbSNP
rs1273892732 1073 dbSNP
rs1138154 1080 dbSNP
rs1188104911 1081 dbSNP
rs1046931967 1103 dbSNP
rs1375465134 1109 dbSNP
rs929801161 1116 dbSNP
rs919725170 1117 dbSNP
rs1177835034 1121 dbSNP
rs1379909443 1125 dbSNP
rs1419623086 1126 dbSNP
rs974000085 1127 dbSNP
rs902307101 1128 dbSNP
rs1042623824 1134 dbSNP
rs943921421 1139 dbSNP
rs1400086811 1144 dbSNP
rs146017511 1145 dbSNP
rs551605054 1149 dbSNP
rs911251494 1150 dbSNP
rs1385682707 1151 dbSNP
rs987194512 1152 dbSNP
rs955520873 1153 dbSNP
rs528638784 1159 dbSNP
rs1031503804 1163 dbSNP
rs1413371370 1164 dbSNP
rs999579850 1165 dbSNP
rs1272736815 1170 dbSNP
rs985368500 1173 dbSNP
rs11541527 1185 dbSNP
rs1022394462 1191 dbSNP
rs776840429 1194 dbSNP
rs895388058 1195 dbSNP
rs557492625 1196 dbSNP
rs1184193504 1198 dbSNP
rs1002949155 1199 dbSNP
rs1293203344 1200 dbSNP
rs1477725879 1201 dbSNP
rs1173291670 1203 dbSNP
rs1320840604 1204 dbSNP
rs1408934733 1205 dbSNP
rs1310160072 1206 dbSNP
rs1331269693 1209 dbSNP
rs1240254166 1214 dbSNP
rs984017092 1214 dbSNP
rs1321137831 1219 dbSNP
rs772062816 1226 dbSNP
rs1330204819 1232 dbSNP
rs529342656 1234 dbSNP
rs1337884426 1235 dbSNP
rs906829126 1258 dbSNP
rs1284727529 1261 dbSNP
rs1315541856 1263 dbSNP
rs1217875405 1266 dbSNP
rs1234678556 1270 dbSNP
rs1458896734 1271 dbSNP
rs1355616746 1272 dbSNP
rs1207886357 1289 dbSNP
rs1277003947 1290 dbSNP
rs1047259438 1293 dbSNP
rs1451317098 1296 dbSNP
rs1025210964 1299 dbSNP
rs1431467392 1312 dbSNP
rs75705010 1319 dbSNP
rs1170539273 1325 dbSNP
rs1425020347 1331 dbSNP
rs919776200 1333 dbSNP
rs1161891881 1335 dbSNP
rs1291092414 1336 dbSNP
rs543801186 1338 dbSNP
rs149458233 1350 dbSNP
rs942624608 1351 dbSNP
rs558889992 1353 dbSNP
rs1337706076 1359 dbSNP
rs902253808 1362 dbSNP
rs911135552 1367 dbSNP
rs1476300096 1368 dbSNP
rs1242334052 1378 dbSNP
rs1264568065 1383 dbSNP
rs986861716 1388 dbSNP
rs1356804013 1392 dbSNP
rs1042180589 1406 dbSNP
rs1271356709 1410 dbSNP
rs1418722561 1412 dbSNP
rs1487329889 1416 dbSNP
rs545253379 1422 dbSNP
rs573007817 1428 dbSNP
rs943856996 1432 dbSNP
rs1264516419 1444 dbSNP
rs1426768169 1448 dbSNP
rs186314703 1472 dbSNP
rs923933271 1473 dbSNP
rs1165044247 1488 dbSNP
rs1358279383 1498 dbSNP
rs978598725 1499 dbSNP
rs368190939 1501 dbSNP
rs573612114 1512 dbSNP
rs968084749 1523 dbSNP
rs1263453353 1533 dbSNP
rs1215239790 1535 dbSNP
rs921896816 1539 dbSNP
rs973820256 1547 dbSNP
rs1247950745 1550 dbSNP
rs1294190726 1562 dbSNP
rs942075193 1571 dbSNP
rs1335052356 1581 dbSNP
rs1256916514 1586 dbSNP
rs1486897934 1590 dbSNP
rs1022446620 1594 dbSNP
rs907948407 1599 dbSNP
rs983576427 1608 dbSNP
rs970870351 1616 dbSNP
rs1025160063 1623 dbSNP
rs1158884561 1625 dbSNP
rs1346402386 1629 dbSNP
rs1464132397 1634 dbSNP
rs181761147 1636 dbSNP
rs1402883153 1637 dbSNP
rs959654328 1638 dbSNP
rs1306895846 1642 dbSNP
rs1383264135 1652 dbSNP
rs139064338 1653 dbSNP
rs1308004791 1654 dbSNP
rs1324271763 1657 dbSNP
rs1003764879 1662 dbSNP
rs1208163898 1664 dbSNP
rs1255903325 1683 dbSNP
rs1462202798 1685 dbSNP
rs1206125237 1691 dbSNP
rs1000939927 1692 dbSNP
rs1439491244 1696 dbSNP
rs906877607 1702 dbSNP
rs1395528488 1715 dbSNP
rs1170182791 1716 dbSNP
rs1409762181 1721 dbSNP
rs966428266 1729 dbSNP
rs1174814338 1734 dbSNP
rs1378132670 1735 dbSNP
rs1025286806 1744 dbSNP
rs138520322 1744 dbSNP
rs539448965 1745 dbSNP
rs1399214753 1746 dbSNP
rs1447292107 1747 dbSNP
rs1298933416 1748 dbSNP
rs898236527 1756 dbSNP
rs1432514819 1757 dbSNP
rs1300594516 1763 dbSNP
rs1459404113 1765 dbSNP
rs1007944750 1768 dbSNP
rs1225833741 1769 dbSNP
rs890936960 1771 dbSNP
rs1038245728 1772 dbSNP
rs942510576 1773 dbSNP
rs1234241009 1776 dbSNP
rs1195233452 1784 dbSNP
rs889587931 1787 dbSNP
rs1468721378 1789 dbSNP
rs1237200705 1793 dbSNP
rs1193648686 1794 dbSNP
rs1422886219 1798 dbSNP
rs551641274 1800 dbSNP
rs1172346774 1801 dbSNP
rs1356492410 1806 dbSNP
rs1251368863 1812 dbSNP
rs1293180168 1815 dbSNP
rs933898232 1819 dbSNP
rs12442618 1822 dbSNP
rs141221119 1830 dbSNP
rs1276832756 1831 dbSNP
rs1312087855 1837 dbSNP
rs978104163 1839 dbSNP
rs1275472141 1846 dbSNP
rs1320308225 1848 dbSNP
rs942006937 1850 dbSNP
rs946835485 1852 dbSNP
rs1490689608 1853 dbSNP
rs146816226 1880 dbSNP
rs990824911 1887 dbSNP
rs549263837 1888 dbSNP
rs1330943887 1900 dbSNP
rs199523665 1904 dbSNP
rs1188216715 1915 dbSNP
rs1047812528 1936 dbSNP
rs1389889373 1940 dbSNP
rs949465289 1941 dbSNP
rs1366481290 1942 dbSNP
rs918048857 1948 dbSNP
rs1465519850 1950 dbSNP
rs1393228235 1956 dbSNP
rs1339941061 1961 dbSNP
rs1432038881 1963 dbSNP
rs1175372964 1967 dbSNP
rs1454551006 1969 dbSNP
rs1228151624 1980 dbSNP
rs990979710 1983 dbSNP
rs1179291410 1984 dbSNP
rs1213823915 1991 dbSNP
rs1284605950 2001 dbSNP
rs1447098251 2004 dbSNP
rs529398815 2005 dbSNP
rs1250660146 2007 dbSNP
rs1199415782 2008 dbSNP
rs1484374727 2009 dbSNP
rs959570287 2011 dbSNP
rs1278834317 2014 dbSNP
rs1386090052 2017 dbSNP
rs1446598302 2017 dbSNP
rs1237061423 2024 dbSNP
rs1320815284 2025 dbSNP
rs1357981034 2025 dbSNP
rs1384284969 2025 dbSNP
rs368849694 2025 dbSNP
rs572780482 2025 dbSNP
rs1349141511 2027 dbSNP
rs563624614 2028 dbSNP
rs1237219837 2029 dbSNP
rs550248643 2032 dbSNP
rs1206423222 2034 dbSNP
rs1276400020 2036 dbSNP
rs982582165 2037 dbSNP
rs1329745440 2042 dbSNP
rs1395550702 2044 dbSNP
rs1244682864 2045 dbSNP
rs1456294932 2046 dbSNP
rs533344149 2051 dbSNP
rs979737522 2055 dbSNP
rs966750407 2058 dbSNP
rs951200887 2060 dbSNP
rs1423686055 2069 dbSNP
rs1435245363 2077 dbSNP
rs1379508018 2078 dbSNP
rs1156557410 2087 dbSNP
rs1408704531 2088 dbSNP
rs565214091 2088 dbSNP
rs1364038513 2089 dbSNP
rs12439040 2096 dbSNP
rs1272506119 2102 dbSNP
rs1473943601 2107 dbSNP
rs1223988109 2117 dbSNP
rs1264963722 2118 dbSNP
rs112489437 2122 dbSNP
rs1250070787 2123 dbSNP
rs559506164 2123 dbSNP
rs1184258158 2125 dbSNP
rs1486272798 2131 dbSNP
rs1244999987 2133 dbSNP
rs1177742288 2134 dbSNP
rs1284059350 2134 dbSNP
rs1432139731 2137 dbSNP
rs1203789205 2138 dbSNP
rs1464375917 2146 dbSNP
rs1028063071 2157 dbSNP
rs377484910 2162 dbSNP
rs1392711308 2163 dbSNP
rs898351777 2166 dbSNP
rs1353706447 2167 dbSNP
rs1405074260 2171 dbSNP
rs1285091008 2173 dbSNP
rs12441925 2174 dbSNP
rs1004144433 2175 dbSNP
rs1295547631 2178 dbSNP
rs886414032 2179 dbSNP
rs1402244310 2180 dbSNP
rs1197727780 2187 dbSNP
rs1288038515 2191 dbSNP
rs1385320633 2193 dbSNP
rs1490200076 2196 dbSNP
rs1200296255 2197 dbSNP
rs1162357338 2199 dbSNP
rs1459541355 2200 dbSNP
rs1419456506 2201 dbSNP
rs1188006809 2202 dbSNP
rs1193116787 2204 dbSNP
rs368745250 2213 dbSNP
rs958879998 2213 dbSNP
rs1477187304 2218 dbSNP
rs1242070000 2220 dbSNP
rs1161064870 2221 dbSNP
rs949401831 2222 dbSNP
rs1449162005 2223 dbSNP
rs918004723 2225 dbSNP
rs1213355584 2228 dbSNP
rs1327945381 2230 dbSNP
rs1332916163 2231 dbSNP
rs1359070258 2231 dbSNP
rs1223506078 2233 dbSNP
rs1275234376 2238 dbSNP
rs1233998761 2240 dbSNP
rs1055241683 2253 dbSNP
rs1430643324 2254 dbSNP
rs1268347631 2257 dbSNP
rs1185941181 2258 dbSNP
rs1384218292 2261 dbSNP
rs1444800106 2262 dbSNP
rs1165103830 2263 dbSNP
rs1358022553 2272 dbSNP
rs1432807357 2274 dbSNP
rs1289350370 2275 dbSNP
rs1387116214 2277 dbSNP
rs1394062374 2278 dbSNP
rs1335758802 2284 dbSNP
rs556615968 2293 dbSNP
rs536681697 2295 dbSNP
rs1322628974 2303 dbSNP
rs1459583622 2304 dbSNP
rs919793483 2305 dbSNP
rs959540509 2310 dbSNP
rs1238483950 2322 dbSNP
rs1305170753 2322 dbSNP
rs1317468359 2322 dbSNP
rs1487176614 2322 dbSNP
rs1202334393 2323 dbSNP
rs1242859440 2332 dbSNP
rs925487479 2334 dbSNP
rs1185013707 2335 dbSNP
rs1035166663 2337 dbSNP
rs1417982192 2340 dbSNP
rs1159279259 2345 dbSNP
rs191700714 2361 dbSNP
rs950979437 2362 dbSNP
rs1025761861 2363 dbSNP
rs1464662939 2366 dbSNP
rs1464430383 2370 dbSNP
rs1336023300 2376 dbSNP
rs993827561 2377 dbSNP
rs966989931 2382 dbSNP
rs187310746 2392 dbSNP
rs1166720127 2403 dbSNP
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rs920444193 5800 dbSNP
rs1216669966 5808 dbSNP
rs1243900448 5810 dbSNP
rs1482586452 5818 dbSNP
rs150875501 5822 dbSNP
rs1340540286 5831 dbSNP
rs1300226200 5839 dbSNP
rs904639008 5841 dbSNP
rs1476359809 5842 dbSNP
rs1044389949 5850 dbSNP
rs1357219912 5880 dbSNP
rs1156518047 5892 dbSNP
rs1406881512 5893 dbSNP
rs1400920576 5895 dbSNP
rs1160717449 5901 dbSNP
rs961949084 5902 dbSNP
rs1414122165 5910 dbSNP
rs1313358026 5911 dbSNP
rs948752746 5913 dbSNP
rs183167887 5921 dbSNP
rs1002856286 5927 dbSNP
rs1287481765 5932 dbSNP
rs141596096 5938 dbSNP
rs1370557499 5942 dbSNP
rs896044755 5957 dbSNP
rs1286469446 5958 dbSNP
rs1299389631 5973 dbSNP
rs28557406 5974 dbSNP
rs1391538676 5980 dbSNP
rs940134109 5995 dbSNP
rs75867794 6009 dbSNP
rs1232640153 6011 dbSNP
rs1470329896 6013 dbSNP
rs1427720228 6016 dbSNP
rs1372224998 6023 dbSNP
rs763448686 6024 dbSNP
rs984325712 6024 dbSNP
rs1433818327 6032 dbSNP
rs930398695 6037 dbSNP
rs544323742 6039 dbSNP
rs974413697 6040 dbSNP
rs1327983012 6041 dbSNP
rs562046331 6047 dbSNP
rs1200472017 6048 dbSNP
rs964747880 6049 dbSNP
rs1281432805 6058 dbSNP
rs1018828907 6061 dbSNP
rs1365591284 6066 dbSNP
rs575289030 6078 dbSNP
rs987351539 6080 dbSNP
rs747801077 6081 dbSNP
rs1350747824 6084 dbSNP
rs1203588995 6086 dbSNP
rs1272777590 6090 dbSNP
rs955996633 6095 dbSNP
rs1206195795 6109 dbSNP
rs1329756293 6122 dbSNP
rs1031459110 6133 dbSNP
rs1193779822 6135 dbSNP
rs191708886 6143 dbSNP
rs904587920 6150 dbSNP
rs1482377467 6152 dbSNP
rs1047160781 6154 dbSNP
rs776340621 6157 dbSNP
rs1206330056 6159 dbSNP
rs1347525477 6163 dbSNP
rs1411386021 6164 dbSNP
rs373382507 6168 dbSNP
rs1321339437 6169 dbSNP
rs1392631464 6179 dbSNP
rs545380941 6180 dbSNP
rs1023488945 6185 dbSNP
rs944375215 6187 dbSNP
rs1304303468 6191 dbSNP
rs1373233481 6197 dbSNP
rs1225901735 6202 dbSNP
rs1270063695 6207 dbSNP
rs1254554981 6212 dbSNP
rs1340503981 6214 dbSNP
rs1235677379 6218 dbSNP
rs1050158900 6225 dbSNP
rs1213887289 6232 dbSNP
rs1012889601 6246 dbSNP
rs1254361741 6247 dbSNP
rs1463118354 6248 dbSNP
rs1192389887 6249 dbSNP
rs1373644902 6249 dbSNP
rs1476346334 6253 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Jiyoye
Tools used in this research TargetScan
Original Description (Extracted from the article) ... HITS-CLIP data was present in Supplenentary. RNA binding protein: AGO2. ...

- Riley KJ; Rabinowitz GS; Yario TA; Luna JM; et al., 2012, The EMBO journal.

Article - Riley KJ; Rabinowitz GS; Yario TA; Luna JM; et al.
- The EMBO journal, 2012
Epstein-Barr virus (EBV) controls gene expression to transform human B cells and maintain viral latency. High-throughput sequencing and crosslinking immunoprecipitation (HITS-CLIP) identified mRNA targets of 44 EBV and 310 human microRNAs (miRNAs) in Jijoye (Latency III) EBV-transformed B cells. While 25% of total cellular miRNAs are viral, only three viral mRNAs, all latent transcripts, are targeted. Thus, miRNAs do not control the latent/lytic switch by targeting EBV lytic genes. Unexpectedly, 90% of the 1664 human 3'-untranslated regions targeted by the 12 most abundant EBV miRNAs are also targeted by human miRNAs via distinct binding sites. Half of these are targets of the oncogenic miR-17 approximately 92 miRNA cluster and associated families, including mRNAs that regulate transcription, apoptosis, Wnt signalling, and the cell cycle. Reporter assays confirmed the functionality of several EBV and miR-17 family miRNA-binding sites in EBV latent membrane protein 1 (LMP1), EBV BHRF1, and host CAPRIN2 mRNAs. Our extensive list of EBV and human miRNA targets implicates miRNAs in the control of EBV latency and illuminates viral miRNA function in general.
LinkOut: [PMID: 22473208]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE26953 Aortic valvular endothelial cells -0.454 1.3e-2 -0.512 5.3e-3 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.481 1.6e-2 0.510 1.1e-2 20 Click to see details
GSE19783 ER- ER- breast cancer 0.212 3.0e-2 0.217 2.7e-2 79 Click to see details
GSE19783 ER+ ER+ breast cancer -0.426 3.1e-2 -0.549 6.1e-3 20 Click to see details
GSE28260 Renal cortex and medulla -0.42 7.7e-2 -0.385 9.7e-2 13 Click to see details
GSE21687 Ependynoma primary tumors 0.175 8.3e-2 0.092 2.3e-1 64 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.277 9.0e-2 0.298 7.4e-2 25 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.244 1.2e-1 -0.008 4.8e-1 25 Click to see details
GSE38226 Liver fibrosis -0.22 1.7e-1 -0.067 3.9e-1 21 Click to see details
GSE28544 Breast cancer -0.19 1.9e-1 -0.436 1.7e-2 24 Click to see details
GSE14794 Lymphoblastoid cells 0.091 2.0e-1 0.095 1.9e-1 90 Click to see details
GSE32688 Pancreatic cancer 0.155 2.0e-1 -0.004 4.9e-1 32 Click to see details
GSE19350 CNS germ cell tumors 0.247 2.2e-1 0.098 3.8e-1 12 Click to see details
GSE19536 Breast cancer 0.073 2.4e-1 0.087 1.9e-1 100 Click to see details
GSE21849 B cell lymphoma -0.139 2.4e-1 0.089 3.2e-1 29 Click to see details
GSE27834 Pluripotent stem cells 0.112 3.4e-1 -0.003 5.0e-1 16 Click to see details
GSE17306 Multiple myeloma 0.037 4.0e-1 -0.030 4.2e-1 49 Click to see details
GSE21032 Prostate cancer 0.027 4.0e-1 -0.014 4.5e-1 83 Click to see details
GSE42095 Differentiated embryonic stem cells 0.025 4.5e-1 0.132 2.7e-1 23 Click to see details
GSE42095 Differentiated embryonic stem cells 0.025 4.5e-1 0.132 2.7e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.379 0.01 -0.329 0.02 42 Click to see details
KIRC -0.246 0.02 -0.226 0.03 68 Click to see details
LUAD -0.453 0.07 -0.587 0.02 12 Click to see details
BRCA -0.16 0.07 -0.138 0.11 84 Click to see details
CESC 0.864 0.17 0.500 0.33 3 Click to see details
KICH -0.192 0.18 -0.232 0.13 25 Click to see details
PCPG -0.822 0.19 -1.000 0.5 3 Click to see details
LIHC -0.109 0.23 -0.071 0.31 49 Click to see details
BLCA 0.181 0.24 0.013 0.48 18 Click to see details
CHOL -0.263 0.25 -0.100 0.4 9 Click to see details
COAD -0.266 0.26 -0.500 0.1 8 Click to see details
ESCA 0.214 0.26 0.127 0.35 11 Click to see details
PRAD 0.074 0.3 0.051 0.36 50 Click to see details
KIRP 0.084 0.32 0.039 0.42 32 Click to see details
PAAD -0.309 0.35 -0.800 0.1 4 Click to see details
THCA -0.052 0.35 -0.133 0.16 59 Click to see details
LUSC 0.039 0.41 0.048 0.39 38 Click to see details
STAD -0.021 0.45 -0.096 0.3 32 Click to see details
UCEC 0.006 0.49 -0.007 0.49 19 Click to see details
UCEC 0.006 0.49 -0.007 0.49 19 Click to see details
UCEC 0.006 0.49 -0.007 0.49 19 Click to see details
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
694 hsa-miR-15a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000280 BMI1 BMI1 proto-oncogene, polycomb ring finger 5 3
MIRT000282 WNT3A Wnt family member 3A 3 2
MIRT000283 MYB MYB proto-oncogene, transcription factor 5 3
MIRT000284 CDC25A cell division cycle 25A 4 4
MIRT000285 CCND2 cyclin D2 4 7
MIRT000804 RAB9B RAB9B, member RAS oncogene family 1 1
MIRT000806 ACTR1A ARP1 actin related protein 1 homolog A 1 1
MIRT000808 TPI1 triosephosphate isomerase 1 1 1
MIRT000810 PDCD4 programmed cell death 4 3 2
MIRT000812 RAB21 RAB21, member RAS oncogene family 2 1
MIRT000815 BCL2 BCL2, apoptosis regulator 6 13
MIRT000817 WT1 Wilms tumor 1 2 1
MIRT000819 ASXL2 additional sex combs like 2, transcriptional regulator 2 1
MIRT000823 TMEM251 transmembrane protein 251 2 1
MIRT000825 CARD8 caspase recruitment domain family member 8 2 1
MIRT000827 CDC14B cell division cycle 14B 2 1
MIRT000829 CENPJ centromere protein J 2 1
MIRT000831 CEP63 centrosomal protein 63 2 1
MIRT000833 CREBL2 cAMP responsive element binding protein like 2 4 5
MIRT000835 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 1
MIRT000847 GOLGA5 golgin A5 2 1
MIRT000849 GOLPH3L golgi phosphoprotein 3 like 2 1
MIRT000851 GTF2H1 general transcription factor IIH subunit 1 2 1
MIRT000853 H3F3B H3 histone family member 3B 2 1
MIRT000855 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 1
MIRT000857 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 1
MIRT000859 HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 2 1
MIRT000863 HRSP12 reactive intermediate imine deaminase A homolog 2 1
MIRT000865 HSDL2 hydroxysteroid dehydrogenase like 2 2 1
MIRT000866 HSPA1A heat shock protein family A (Hsp70) member 1A 2 1
MIRT000868 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 1
MIRT000878 MCL1 MCL1, BCL2 family apoptosis regulator 2 1
MIRT000880 MSH2 mutS homolog 2 2 1
MIRT000884 OMA1 OMA1 zinc metallopeptidase 2 1
MIRT000886 OSGEPL1 O-sialoglycoprotein endopeptidase like 1 2 1
MIRT000888 PDCD6IP programmed cell death 6 interacting protein 2 1
MIRT000890 PHKB phosphorylase kinase regulatory subunit beta 2 1
MIRT000892 PMS1 PMS1 homolog 1, mismatch repair system component 2 1
MIRT000894 PNN pinin, desmosome associated protein 2 1
MIRT000896 PRIM1 DNA primase subunit 1 2 1
MIRT000898 RAD51C RAD51 paralog C 2 1
MIRT000900 RHOT1 ras homolog family member T1 2 1
MIRT000902 RNASEL ribonuclease L 2 1
MIRT000906 SLC35A1 solute carrier family 35 member A1 2 1
MIRT000908 SLC35B3 solute carrier family 35 member B3 2 1
MIRT000910 TIA1 TIA1 cytotoxic granule associated RNA binding protein 2 1
MIRT000914 UGDH UDP-glucose 6-dehydrogenase 2 1
MIRT000916 UGP2 UDP-glucose pyrophosphorylase 2 2 1
MIRT000922 ZNF559 zinc finger protein 559 2 1
MIRT001227 CCND1 cyclin D1 6 8
MIRT001228 CCNE1 cyclin E1 7 10
MIRT001802 BACE1 beta-secretase 1 2 1
MIRT002946 DMTF1 cyclin D binding myb like transcription factor 1 4 4
MIRT003330 RPS6 ribosomal protein S6 0 1
MIRT003333 BRCA1 BRCA1, DNA repair associated 2 2
MIRT003334 AKT3 AKT serine/threonine kinase 3 3 6
MIRT003872 WIPF1 WAS/WASL interacting protein family member 1 2 1
MIRT003873 VPS45 vacuolar protein sorting 45 homolog 2 1
MIRT003874 HSP90B1 heat shock protein 90 beta family member 1 2 1
MIRT003875 SKAP2 src kinase associated phosphoprotein 2 3 1
MIRT003876 NT5DC1 5'-nucleotidase domain containing 1 2 1
MIRT003877 FAM69A family with sequence similarity 69 member A 2 1
MIRT003878 C2orf74 chromosome 2 open reading frame 74 1 1
MIRT003879 FAM122C family with sequence similarity 122C 2 1
MIRT003880 PWWP2A PWWP domain containing 2A 2 1
MIRT003881 C17orf80 chromosome 17 open reading frame 80 2 1
MIRT003882 CCDC111 primase and DNA directed polymerase 2 1
MIRT003883 C2orf43 lipid droplet associated hydrolase 2 1
MIRT003884 C4orf27 histone PARylation factor 1 2 1
MIRT003885 NIPAL2 NIPA like domain containing 2 2 1
MIRT003886 TRMT13 tRNA methyltransferase 13 homolog 2 1
MIRT003887 ANAPC16 anaphase promoting complex subunit 16 2 1
MIRT003888 CADM1 cell adhesion molecule 1 3 1
MIRT003891 TMEM184B transmembrane protein 184B 2 1
MIRT003899 APP amyloid beta precursor protein 4 3
MIRT004046 UCP2 uncoupling protein 2 3 1
MIRT004275 VEGFA vascular endothelial growth factor A 7 17
MIRT004680 TSPYL2 TSPY like 2 2 1
MIRT004829 NFKB1 nuclear factor kappa B subunit 1 3 1
MIRT005552 CHUK conserved helix-loop-helix ubiquitous kinase 4 1
MIRT005763 TP53 tumor protein p53 1 1
MIRT006027 FGF7 fibroblast growth factor 7 2 1
MIRT006176 CLCN3 chloride voltage-gated channel 3 4 1
MIRT006177 CRKL CRK like proto-oncogene, adaptor protein 6 3
MIRT006181 MN1 MN1 proto-oncogene, transcriptional regulator 4 1
MIRT006658 Ccnd1 cyclin D1 2 2
MIRT006801 HMGA1 high mobility group AT-hook 1 4 2
MIRT006805 HMGA2 high mobility group AT-hook 2 3 1
MIRT006913 IFNG interferon gamma 2 1
MIRT006998 PURA purine rich element binding protein A 2 2
MIRT007090 RECK reversion inducing cysteine rich protein with kazal motifs 4 3
MIRT032077 DLK1 delta like non-canonical Notch ligand 1 2 1
MIRT051311 PLA2G2D phospholipase A2 group IID 1 1
MIRT051312 ACVR1B activin A receptor type 1B 1 1
MIRT051313 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 1 1
MIRT051314 GCLM glutamate-cysteine ligase modifier subunit 1 1
MIRT051315 PCF11 PCF11 cleavage and polyadenylation factor subunit 1 1
MIRT051316 HIST1H2BK histone cluster 1 H2B family member k 1 1
MIRT051317 ODC1 ornithine decarboxylase 1 1 1
MIRT051318 CALD1 caldesmon 1 1 1
MIRT051319 RPP30 ribonuclease P/MRP subunit p30 1 1
MIRT051320 ASNSD1 asparagine synthetase domain containing 1 1 1
MIRT051321 CCNYL1 cyclin Y like 1 1 1
MIRT051322 RGPD5 RANBP2-like and GRIP domain containing 5 1 1
MIRT051323 PREB prolactin regulatory element binding 1 1
MIRT051324 PDHX pyruvate dehydrogenase complex component X 1 1
MIRT051325 SNX6 sorting nexin 6 1 1
MIRT051326 CNN3 calponin 3 1 1
MIRT051327 KIF1A kinesin family member 1A 1 1
MIRT051328 NAB1 NGFI-A binding protein 1 1 1
MIRT051329 CCT6B chaperonin containing TCP1 subunit 6B 1 1
MIRT051330 CHD4 chromodomain helicase DNA binding protein 4 1 1
MIRT051331 CLCC1 chloride channel CLIC like 1 1 1
MIRT051332 GDI2 GDP dissociation inhibitor 2 1 1
MIRT051333 BRWD1 bromodomain and WD repeat domain containing 1 1 1
MIRT051334 MAPK6 mitogen-activated protein kinase 6 1 1
MIRT051335 PSMC4 proteasome 26S subunit, ATPase 4 1 1
MIRT051336 ATF2 activating transcription factor 2 1 1
MIRT051337 ATP6AP1 ATPase H+ transporting accessory protein 1 1 1
MIRT051338 FBXO3 F-box protein 3 1 1
MIRT051339 PRDX3 peroxiredoxin 3 1 1
MIRT051340 CABIN1 calcineurin binding protein 1 1 1
MIRT051341 FASN fatty acid synthase 2 5
MIRT051342 SEC63 SEC63 homolog, protein translocation regulator 1 1
MIRT051343 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 1 1
MIRT051344 DSTYK dual serine/threonine and tyrosine protein kinase 1 1
MIRT051345 FOXO1 forkhead box O1 4 2
MIRT051346 TMEM214 transmembrane protein 214 1 1
MIRT051347 TRIM28 tripartite motif containing 28 1 1
MIRT051348 NOP2 NOP2 nucleolar protein 1 1
MIRT051349 MYBL1 MYB proto-oncogene like 1 1 1
MIRT051350 TTC1 tetratricopeptide repeat domain 1 1 1
MIRT051351 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 1 2
MIRT052930 REPIN1 replication initiator 1 2 1
MIRT053079 KLF4 Kruppel like factor 4 2 1
MIRT054283 YAP1 Yes associated protein 1 3 1
MIRT054424 CARM1 coactivator associated arginine methyltransferase 1 3 1
MIRT054895 SOX5 SRY-box 5 2 1
MIRT055421 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 11
MIRT055811 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT057514 CEP55 centrosomal protein 55 2 8
MIRT057729 ZDHHC16 zinc finger DHHC-type containing 16 2 2
MIRT057906 STXBP3 syntaxin binding protein 3 1 1
MIRT061005 C1ORF21 chromosome 1 open reading frame 21 2 6