miRTarBase - #MIRT726789 -
pre-miRNA Information
pre-miRNA hsa-mir-15a   
Genomic Coordinates chr13: 50049119 - 50049201
Synonyms MIRN15A, hsa-mir-15a, miRNA15A, MIR15A
Description Homo sapiens miR-15a stem-loop
Comment Reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-15a-5p
Sequence 14| UAGCAGCACAUAAUGGUUUGUG |35
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1355089203 8 dbSNP
rs753467375 11 dbSNP
rs923737993 12 dbSNP
rs766120172 20 dbSNP
rs1359939022 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RAP2C   
Synonyms -
Description RAP2C, member of RAS oncogene family
Transcript NM_021183   
Expression
Putative miRNA Targets on RAP2C
3'UTR of RAP2C
(miRNA target sites are highlighted)		 
>RAP2C|NM_021183|3'UTR
   1 AGAAGATAACCTCAATCATGGCCATACCGAGCAGATAAAACTCAGAGGAAATTTGCACAGATGCTGCTTTGGAGAACTTT
  81 ACAACCTGGGTTGCAGAACTGAGCCTTGGTAAACCTGTCTCTATTACAGCATGTTGCCATACATCTATTTAAGTGCATAA
 161 GGTCTTTGGCCTTCAAGATCCATCGACCTTAAACAGGAATGCTTAGCACGTTTACCATACGTTTAAAATCCATTCTTTAT
 241 CAATCAGTCCTTTTATAGCTTTCTAAGTTCTTATTGATGGCTAATATACAAGGGTTAATTTTTAATATTTTAATTGATTT
 321 CTTTAATCAGTTTCTCGACTTGTATTTATTAAATACTCAAACTCAGTATTACCTACTCAATGCCTTTTAAAAGAAAGTTA
 401 TAATGGAGAAAAAATTGAGCCTTAAACAAATGGTTACTTCTGTATATTACCTCGTACCAGTGCTTCATCCTATTTGTAAA
 481 ATCTTTCTCCTTTAAAATTATTGGTTAATACTTTGAGACTTTGTTTACGTGTGGCAGTGTTGTAAAAAGAAACTAAAGAT
 561 CACATTTTACCTGTATGGATGGAATATCCCTTTTCTTCAAGTGCAGTTTGTGATGTGTTTTGTTTTTTTTTTTTTTTTTT
 641 TGTAATTAACATGTTCTGAAGGTTACAATTGATATTTGAAATTGACTGTAGAGCATTTAGTTGAAGAGTTAAGCATTCAG
 721 TTCCATTAGGTTTTCACATGTGTTAATCTCATTTACAGCATTGAATTGCGGCAGTAACATTTTCCTTTCTGTGAAGTTCT
 801 AAATTTAGTTATGACCTATTTAGCAATGCCTTTGAAAAGGGATATTGTATCCATGGTAAATTAATTGTATACCTAAACAG
 881 AGATAGCTCATCTTTGCCTATCAGGCTTGTAATTGACATCTAGTAGACTTCTGCACATGTAAAATTGAATTCAAATAAAA
 961 TCATACACACTTTCTAGTTCTTAATATTTGTCTTTCTGAATAATAGTTTAAAGCAATATTTGTTAAAGTTTTCTTGCACT
1041 ATCACAATTGCTTTTTAGTTATTTCTCAAGAAGCATGTTCGTATTAGAGACAAAATCTGTGTAACAGGAGGGAGAATAGC
1121 GCCAAGTCTCTGGGCTATTTTTTATTTTTGCAAATGTGCTTTCTAATAGCCATTGCCTTCCATGTTGTTTACCTAATCAG
1201 CATATTTTTGTCTGAATACTTGAACATTTTAACAGTAACGCAGGTGTAGAATCAGAAAGGAAACTTATGCAGAGTAATAT
1281 TTTGGTTCAGTTTTAACATCGTGACAATGAGGGCTTTTTCTAGCAATGATTTTTAAATTGTGTAAGTTTGACAGTATTTT
1361 ATTGTTGGGTTTTTATTTGATTTTAGTTGTGTGCTTTTCATTTGCAGAAGTTAGTAACTGCAGCTCACCTACTGCACCAA
1441 AGTTCTCGATTTTAGGAGCCCAGCTTTAGTCATTTGAACATGCTTCTAAATAAAATAAAACAAAACCAAAACTATACTTT
1521 TGATCTATAATAAGAGCTCAATAACTTTGTCAAGGAAAGCTCTAATATATGCAGTGATGGTTTATGAAAGGGTGTGGCAA
1601 TTTTAAATTTATATTGTGTGTGATGTTCAAATAAAGTGGTATCTACATTCATGTGATTTATGGGTCAGCATGACCATTAA
1681 TTACTGAGTAGAAATTGACTAAACTTTGATTTCCTTTTTTTAAATCGTGTTGCATTTGATTCCTGAGCAAATTCCCTCAA
1761 AGTGAACTCTTGTTCTTAAATTTTGAATTTTATGGTGAGATTGTAAAGATAGAGGCAATTGAAACATTGTTCCTTATTTA
1841 TGAACTGCTTGAAGTGAATACTTAATTTAAGTTTGCACTTTAATACCAAACTTAAAACCAAACACTCATTTAAAAGTAGG
1921 TTAAGTGATCATGGATCATTGTTATTAGCTTTGTGGCTTTGTGAAATTCTAAAGGAATCAAATAATTCATCATGATTTAA
2001 ATTTTCTAGAGATTTTGATTTTTTTATAATGTTTCTTTCCTGTAGATTGTGTTCTTGTTTCTCTCTCTCTCTCTCTCTCT
2081 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAATTACAGTGTTCATTGTCATTGACCTCAGCAGCAAATTTGAC
2161 TTGAATTCACTTAGGATCGCAGGAATCAGGGGAAAGTGATTTTAAAGGTGGTTTCTCCAGCACATTTTAAGAAAAGGGAC
2241 CAAAAGTTATTTTAGCTTCCTCAATAGATTGCATGTTGCTTATTAGGATAATAAATTAATATTAAATGCAATATATGTCT
2321 TGTCTTTATTATGGCATCTATTTAGGAGTTGTTCAAATCACTGCAGTAGGGCTCTGCAAATAAAATAATGTAACCTATTA
2401 TCATGGATCTAATGTACTGTAACTTTATCAGTGAAAGGTAAAATCTCAAATAACAAGTACAAACATTGAACAATTACCTA
2481 TAAAGATTTGTAAAAGTAAAATTTTTCCAATAGATTTCATTCTTGTCATTTTGTAAGACGACCCTGCAGTCCACCTGTTT
2561 GTAACTTTTTTAATAAAATAGACATCTGTATTACTGAG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1 
miRNA  3' gugUUUG---GUAAUACACGACGAu 5'
             |||:   ||  |  ||||||| 
Target 5' aggAAATTTGCA-CAGATGCTGCTt 3'
 		46 - 69 142.00 -13.10
2 
miRNA  3' guGUUUGGUAAUACACGACGAu 5'
            |||   |||:  ||:|||| 
Target 5' ctCAATAGATTGCATGTTGCTt 3'
 		2260 - 2281 140.00 -9.00
3 
miRNA  3' gugUUUGGUAAUACACGACGAu 5'
             ||:::| ||  ||| ||| 
Target 5' cagAAGTTAGTAACTGCAGCTc 3'
 		1405 - 1426 127.00 -7.50
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs777789148 3 dbSNP
rs41304510 7 dbSNP
rs372738218 15 dbSNP
rs748348146 19 dbSNP
rs376689662 27 dbSNP
rs199820331 28 dbSNP
rs754095049 29 dbSNP
rs1236437876 42 dbSNP
rs1348455851 44 dbSNP
rs1274142999 46 dbSNP
rs777894369 61 dbSNP
rs941709088 91 dbSNP
rs758676138 114 dbSNP
rs1250854799 117 dbSNP
rs907602042 124 dbSNP
rs752812249 141 dbSNP
rs983149903 158 dbSNP
rs952270991 164 dbSNP
rs922115285 170 dbSNP
rs191146862 171 dbSNP
rs1339004936 175 dbSNP
rs777124217 182 dbSNP
rs923103455 183 dbSNP
rs1352289862 193 dbSNP
rs552004394 196 dbSNP
rs1018993508 201 dbSNP
rs1463101665 205 dbSNP
rs869152906 205 dbSNP
rs750419250 212 dbSNP
rs964622806 223 dbSNP
rs1453943133 224 dbSNP
rs1284977125 246 dbSNP
rs1345859923 253 dbSNP
rs1408902109 259 dbSNP
rs1217971717 266 dbSNP
rs1489886682 273 dbSNP
rs1309162695 274 dbSNP
rs374712233 286 dbSNP
rs1157099373 302 dbSNP
rs1251961184 315 dbSNP
rs1490249106 322 dbSNP
rs746535636 334 dbSNP
rs1032974361 335 dbSNP
rs1490603358 336 dbSNP
rs1186259894 342 dbSNP
rs1000761896 345 dbSNP
rs187848677 351 dbSNP
rs978764246 353 dbSNP
rs968721637 360 dbSNP
rs1471697564 363 dbSNP
rs1236635535 364 dbSNP
rs1422389224 375 dbSNP
rs1216410466 397 dbSNP
rs1304543086 405 dbSNP
rs1365780792 413 dbSNP
rs1429831586 419 dbSNP
rs1184173356 427 dbSNP
rs1286886597 428 dbSNP
rs1364076451 429 dbSNP
rs1020327952 445 dbSNP
rs116679146 451 dbSNP
rs761354665 456 dbSNP
rs1244095005 477 dbSNP
rs772145229 478 dbSNP
rs1207617621 481 dbSNP
rs183166263 492 dbSNP
rs1215589507 503 dbSNP
rs1240659793 504 dbSNP
rs751114184 554 dbSNP
rs1035855702 574 dbSNP
rs1002117733 578 dbSNP
rs1442283221 594 dbSNP
rs79879112 595 dbSNP
rs906090176 600 dbSNP
rs940412616 607 dbSNP
rs763466101 616 dbSNP
rs143853322 630 dbSNP
rs774942686 673 dbSNP
rs1380445337 677 dbSNP
rs140192546 682 dbSNP
rs1317229900 683 dbSNP
rs1360517372 684 dbSNP
rs190655330 685 dbSNP
rs966205732 699 dbSNP
rs1320561647 705 dbSNP
rs1319067151 739 dbSNP
rs1403780184 746 dbSNP
rs1216919002 762 dbSNP
rs1384814601 765 dbSNP
rs1164026461 776 dbSNP
rs1446210464 777 dbSNP
rs1184972293 778 dbSNP
rs1388318323 779 dbSNP
rs1243151131 781 dbSNP
rs912041858 785 dbSNP
rs886087225 786 dbSNP
rs1185789152 787 dbSNP
rs1047423142 793 dbSNP
rs1401113369 795 dbSNP
rs1175413338 796 dbSNP
rs1191375595 796 dbSNP
rs1403884764 796 dbSNP
rs1475463054 802 dbSNP
rs1243293711 804 dbSNP
rs1441798921 817 dbSNP
rs1278045659 837 dbSNP
rs777322770 838 dbSNP
rs923031489 854 dbSNP
rs186950766 863 dbSNP
rs150657864 867 dbSNP
rs777929855 906 dbSNP
rs780896001 910 dbSNP
rs1038824938 935 dbSNP
rs368065437 941 dbSNP
rs1206058782 942 dbSNP
rs771987030 969 dbSNP
rs866269130 979 dbSNP
rs943217695 983 dbSNP
rs754797411 1013 dbSNP
rs1361958292 1033 dbSNP
rs1470298706 1054 dbSNP
rs1000124538 1056 dbSNP
rs1296066386 1061 dbSNP
rs1198504081 1068 dbSNP
rs979747706 1078 dbSNP
rs1481392175 1090 dbSNP
rs968388077 1093 dbSNP
rs1177023870 1099 dbSNP
rs751162928 1104 dbSNP
rs966643197 1116 dbSNP
rs1326920876 1119 dbSNP
rs748406857 1121 dbSNP
rs1023513823 1129 dbSNP
rs988846029 1130 dbSNP
rs960077430 1131 dbSNP
rs1012501153 1146 dbSNP
rs1343971918 1148 dbSNP
rs1272044938 1153 dbSNP
rs778998631 1154 dbSNP
rs1339278093 1170 dbSNP
rs1001681440 1172 dbSNP
rs970617340 1177 dbSNP
rs1438048865 1194 dbSNP
rs1221198584 1207 dbSNP
rs1266550106 1210 dbSNP
rs1490792138 1221 dbSNP
rs1056307471 1222 dbSNP
rs1365248290 1224 dbSNP
rs762707724 1240 dbSNP
rs1303975014 1242 dbSNP
rs1426319534 1256 dbSNP
rs1368405679 1260 dbSNP
rs1166236776 1276 dbSNP
rs866779770 1277 dbSNP
rs1004657509 1290 dbSNP
rs1421670020 1298 dbSNP
rs1430668999 1304 dbSNP
rs1302736568 1327 dbSNP
rs1429010193 1332 dbSNP
rs1421532273 1336 dbSNP
rs1363910270 1339 dbSNP
rs755953352 1352 dbSNP
rs1016455576 1361 dbSNP
rs1324599372 1362 dbSNP
rs1326421354 1365 dbSNP
rs750188517 1368 dbSNP
rs1189009486 1401 dbSNP
rs1342205313 1409 dbSNP
rs141964122 1416 dbSNP
rs886723596 1424 dbSNP
rs183239941 1437 dbSNP
rs1201067052 1468 dbSNP
rs930300418 1477 dbSNP
rs922188507 1481 dbSNP
rs1260697108 1499 dbSNP
rs1445226461 1504 dbSNP
rs1195181116 1505 dbSNP
rs1243948260 1510 dbSNP
rs867381662 1513 dbSNP
rs1450210355 1521 dbSNP
rs1272885500 1532 dbSNP
rs1039323626 1547 dbSNP
rs944952288 1548 dbSNP
rs1426780277 1550 dbSNP
rs5977657 1558 dbSNP
rs1275701044 1562 dbSNP
rs988926482 1564 dbSNP
rs1217607685 1573 dbSNP
rs934760123 1583 dbSNP
rs1284176489 1598 dbSNP
rs926015505 1607 dbSNP
rs777283915 1610 dbSNP
rs1366534728 1628 dbSNP
rs769105621 1637 dbSNP
rs970050094 1643 dbSNP
rs763668103 1659 dbSNP
rs943164966 1666 dbSNP
rs761147614 1679 dbSNP
rs762369522 1696 dbSNP
rs1244995338 1698 dbSNP
rs1259950205 1703 dbSNP
rs1348225267 1704 dbSNP
rs925092856 1715 dbSNP
rs1043619657 1723 dbSNP
rs775976888 1740 dbSNP
rs1183134812 1763 dbSNP
rs191456787 1764 dbSNP
rs945267777 1766 dbSNP
rs960888405 1791 dbSNP
rs186206423 1818 dbSNP
rs1004688420 1828 dbSNP
rs1462292226 1850 dbSNP
rs1356277178 1854 dbSNP
rs760015158 1860 dbSNP
rs886205616 1867 dbSNP
rs1027366234 1876 dbSNP
rs1334138719 1883 dbSNP
rs777164943 1897 dbSNP
rs111513378 1901 dbSNP
rs960041471 1901 dbSNP
rs994989592 1904 dbSNP
rs1396282521 1908 dbSNP
rs771370982 1918 dbSNP
rs866399115 1929 dbSNP
rs867578403 1930 dbSNP
rs111932725 1933 dbSNP
rs35354816 1933 dbSNP
rs375711409 1933 dbSNP
rs201944822 1935 dbSNP
rs67630091 1935 dbSNP
rs868080061 1935 dbSNP
rs1288743709 1943 dbSNP
rs1322731023 1962 dbSNP
rs1178183462 1984 dbSNP
rs1039093819 1986 dbSNP
rs980576178 2010 dbSNP
rs1484252777 2016 dbSNP
rs1201088931 2017 dbSNP
rs1250153617 2071 dbSNP
rs1417557755 2082 dbSNP
rs1184792945 2092 dbSNP
rs1316813692 2098 dbSNP
rs1471431119 2105 dbSNP
rs1249359868 2108 dbSNP
rs1480410395 2110 dbSNP
rs1177044417 2111 dbSNP
rs1432041661 2112 dbSNP
rs1466146882 2116 dbSNP
rs1297091556 2122 dbSNP
rs1308421095 2123 dbSNP
rs1392699554 2123 dbSNP
rs1407235301 2123 dbSNP
rs1481159789 2125 dbSNP
rs377519307 2153 dbSNP
rs1221643045 2170 dbSNP
rs1285171136 2172 dbSNP
rs772261322 2201 dbSNP
rs1202264793 2202 dbSNP
rs1234145016 2203 dbSNP
rs1250768922 2216 dbSNP
rs1479788555 2232 dbSNP
rs1207500565 2238 dbSNP
rs1253030935 2247 dbSNP
rs1322943744 2251 dbSNP
rs1263788456 2252 dbSNP
rs890679500 2259 dbSNP
rs1427934374 2261 dbSNP
rs1434251902 2280 dbSNP
rs1327403700 2327 dbSNP
rs1306556881 2346 dbSNP
rs748154670 2348 dbSNP
rs746156483 2353 dbSNP
rs779237027 2364 dbSNP
rs926047983 2369 dbSNP
rs778798178 2371 dbSNP
rs950928366 2378 dbSNP
rs1364533727 2411 dbSNP
rs1451779971 2420 dbSNP
rs1026540867 2422 dbSNP
rs1304730186 2427 dbSNP
rs1368224256 2475 dbSNP
rs1381521303 2499 dbSNP
rs1294973022 2503 dbSNP
rs1305799459 2512 dbSNP
rs771045333 2514 dbSNP
rs748035767 2527 dbSNP
rs1406695797 2531 dbSNP
rs60466594 2554 dbSNP
rs1220803990 2555 dbSNP
rs948812669 2557 dbSNP
rs915936105 2564 dbSNP
rs1489098688 2569 dbSNP
rs1186391868 2579 dbSNP
rs1455179080 2593 dbSNP
rs1362926623 2607 dbSNP
rs749464919 2630 dbSNP
rs993223791 2630 dbSNP
rs1038723325 2643 dbSNP
rs1178889684 2644 dbSNP
rs960667968 2658 dbSNP
rs780981693 2682 dbSNP
rs1350203112 2686 dbSNP
rs1410560907 2688 dbSNP
rs1287087597 2696 dbSNP
rs1367243646 2699 dbSNP
rs781139424 2719 dbSNP
rs1437441315 2722 dbSNP
rs1034911004 2725 dbSNP
rs1382314071 2726 dbSNP
rs983284310 2728 dbSNP
rs180940006 2729 dbSNP
rs892358990 2731 dbSNP
rs1027489708 2742 dbSNP
rs939306565 2743 dbSNP
rs1461295844 2754 dbSNP
rs994621716 2759 dbSNP
rs980158110 2771 dbSNP
rs751585053 2780 dbSNP
rs751334371 2786 dbSNP
rs1183199294 2799 dbSNP
rs1414032887 2814 dbSNP
rs1418335999 2826 dbSNP
rs1156650976 2830 dbSNP
rs1390828317 2856 dbSNP
rs1008957560 2871 dbSNP
rs890710419 2876 dbSNP
rs984899020 2879 dbSNP
rs1053266671 2882 dbSNP
rs950900429 2885 dbSNP
rs934905754 2906 dbSNP
rs777562665 2918 dbSNP
rs1286213079 2930 dbSNP
rs779956337 2937 dbSNP
rs1223647281 2939 dbSNP
rs1484896092 2946 dbSNP
rs1260375124 2966 dbSNP
rs948859343 2977 dbSNP
rs757981670 2983 dbSNP
rs1261999700 3006 dbSNP
rs1459621980 3014 dbSNP
rs1211594715 3022 dbSNP
rs1237754953 3033 dbSNP
rs1057148753 3034 dbSNP
rs1312695660 3057 dbSNP
rs938624194 3060 dbSNP
rs753483126 3062 dbSNP
rs1472888034 3065 dbSNP
rs1175569584 3067 dbSNP
rs976289140 3071 dbSNP
rs1412886038 3073 dbSNP
rs1336229876 3085 dbSNP
rs927872491 3094 dbSNP
rs1359971836 3096 dbSNP
rs1338623589 3106 dbSNP
rs1441673516 3107 dbSNP
rs983408572 3132 dbSNP
rs757971820 3133 dbSNP
rs1229365116 3134 dbSNP
rs1283266857 3138 dbSNP
rs950597645 3139 dbSNP
rs1220517745 3140 dbSNP
rs1017680495 3155 dbSNP
rs752113437 3163 dbSNP
rs1289113475 3168 dbSNP
rs1436873617 3177 dbSNP
rs920457495 3183 dbSNP
rs750093376 3186 dbSNP
rs1253747096 3197 dbSNP
rs973617380 3200 dbSNP
rs1483282943 3202 dbSNP
rs188193391 3211 dbSNP
rs1266754786 3216 dbSNP
rs903561806 3219 dbSNP
rs1478932055 3220 dbSNP
rs1017732735 3221 dbSNP
rs1425901446 3225 dbSNP
rs77691679 3230 dbSNP
rs1409642476 3241 dbSNP
rs186535882 3258 dbSNP
rs1386415226 3264 dbSNP
rs181905126 3270 dbSNP
rs144756845 3276 dbSNP
rs1426837207 3277 dbSNP
rs1261078216 3279 dbSNP
rs999085526 3287 dbSNP
rs904771038 3292 dbSNP
rs190181172 3294 dbSNP
rs892285336 3301 dbSNP
rs1338126397 3310 dbSNP
rs1225503719 3319 dbSNP
rs1043243217 3328 dbSNP
rs1276393338 3354 dbSNP
rs773828089 3355 dbSNP
rs1289255004 3357 dbSNP
rs894559695 3358 dbSNP
rs1057453747 3360 dbSNP
rs185308694 3361 dbSNP
rs908570067 3370 dbSNP
rs1186746020 3388 dbSNP
rs1359807702 3410 dbSNP
rs1317098107 3411 dbSNP
rs948765244 3421 dbSNP
rs1163352010 3432 dbSNP
rs1388959700 3493 dbSNP
rs1225093594 3501 dbSNP
rs1325382285 3502 dbSNP
rs1324828392 3504 dbSNP
rs762340125 3511 dbSNP
rs1432331719 3518 dbSNP
rs909270714 3520 dbSNP
rs1047084152 3523 dbSNP
rs754353254 3542 dbSNP
rs929223791 3567 dbSNP
rs764661074 3573 dbSNP
rs919425487 3582 dbSNP
rs1358251751 3610 dbSNP
rs1365121368 3611 dbSNP
rs1302070226 3614 dbSNP
rs1424436369 3626 dbSNP
rs1283551102 3628 dbSNP
rs1463489494 3636 dbSNP
rs1366529245 3638 dbSNP
rs920484833 3652 dbSNP
rs1249913126 3654 dbSNP
rs973263572 3667 dbSNP
rs964869355 3672 dbSNP
rs976314006 3675 dbSNP
rs966662472 3676 dbSNP
rs1474006421 3685 dbSNP
rs761309265 3686 dbSNP
rs1456048726 3687 dbSNP
rs1194063146 3700 dbSNP
rs967726278 3711 dbSNP
rs1430374357 3721 dbSNP
rs1267049113 3737 dbSNP
rs1021993258 3747 dbSNP
rs1009316491 3750 dbSNP
rs1341884773 3760 dbSNP
rs892254396 3772 dbSNP
rs987665364 3777 dbSNP
rs1278672373 3781 dbSNP
rs775717803 3785 dbSNP
rs1327010817 3796 dbSNP
rs954443060 3797 dbSNP
rs1230097801 3801 dbSNP
rs1270124014 3807 dbSNP
rs1490459458 3816 dbSNP
rs1465429806 3817 dbSNP
rs1199918475 3828 dbSNP
rs1254403264 3828 dbSNP
rs1444338680 3832 dbSNP
rs1188680865 3836 dbSNP
rs1411630380 3868 dbSNP
rs1293625309 3879 dbSNP
rs1471915344 3891 dbSNP
rs1162050800 3896 dbSNP
rs1413316326 3898 dbSNP
rs1468891961 3910 dbSNP
rs1034814770 3956 dbSNP
rs767931553 3969 dbSNP
rs1338723600 3977 dbSNP
rs1251804850 3980 dbSNP
rs998447726 4008 dbSNP
rs1327959991 4028 dbSNP
rs905082861 4034 dbSNP
rs1411389942 4041 dbSNP
rs1045000103 4051 dbSNP
rs1322713019 4054 dbSNP
rs774435341 4059 dbSNP
rs1343028461 4064 dbSNP
rs1347412912 4074 dbSNP
rs887762460 4077 dbSNP
rs1049091652 4084 dbSNP
rs1405134303 4094 dbSNP
rs1482307591 4097 dbSNP
rs1022253001 4099 dbSNP
rs929388213 4101 dbSNP
rs1253255406 4111 dbSNP
rs1013092454 4115 dbSNP
rs1173364184 4123 dbSNP
rs894667890 4125 dbSNP
rs1378816603 4136 dbSNP
rs1326002463 4138 dbSNP
rs1466258563 4150 dbSNP
rs1167000589 4156 dbSNP
rs1057283193 4159 dbSNP
rs1411492933 4162 dbSNP
rs1040904669 4171 dbSNP
rs192827178 4177 dbSNP
rs1002988734 4181 dbSNP
rs944911986 4191 dbSNP
rs749513885 4195 dbSNP
rs753085751 4195 dbSNP
rs142986825 4196 dbSNP
rs770766592 4200 dbSNP
rs1427235932 4201 dbSNP
rs931262928 4205 dbSNP
rs1207753082 4213 dbSNP
rs12013224 4215 dbSNP
rs777810494 4230 dbSNP
rs1189941857 4238 dbSNP
rs1270054409 4252 dbSNP
rs146417169 4262 dbSNP
rs1187369561 4267 dbSNP
rs1388008200 4282 dbSNP
rs1431183241 4284 dbSNP
rs1169000656 4285 dbSNP
rs1271293548 4295 dbSNP
rs910400314 4296 dbSNP
rs1295273826 4300 dbSNP
rs748072039 4308 dbSNP
rs1387491912 4313 dbSNP
rs1437012803 4314 dbSNP
rs1296889080 4320 dbSNP
rs968328355 4323 dbSNP
rs1230827304 4326 dbSNP
rs987251247 4332 dbSNP
rs774658127 4335 dbSNP
rs933083799 4339 dbSNP
rs924339772 4344 dbSNP
rs977057903 4352 dbSNP
rs968753050 4366 dbSNP
rs142239511 4373 dbSNP
rs1219789919 4375 dbSNP
rs754473462 4387 dbSNP
rs992188018 4389 dbSNP
rs958975659 4390 dbSNP
rs1207560948 4411 dbSNP
rs1036283682 4417 dbSNP
rs753612720 4420 dbSNP
rs1320839989 4427 dbSNP
rs1003021247 4429 dbSNP
rs1188853528 4438 dbSNP
rs1262006446 4448 dbSNP
rs1223565663 4462 dbSNP
rs1421896625 4470 dbSNP
rs1166645646 4482 dbSNP
rs1350407701 4486 dbSNP
rs537426854 4498 dbSNP
rs887194183 4506 dbSNP
rs1034792525 4537 dbSNP
rs1003757443 4547 dbSNP
rs1025700465 4549 dbSNP
rs1325312476 4551 dbSNP
rs995583545 4553 dbSNP
rs1264049422 4556 dbSNP
rs770960399 4561 dbSNP
rs898529877 4562 dbSNP
rs1039689029 4567 dbSNP
rs766116459 4575 dbSNP
rs1023914428 4579 dbSNP
rs189907390 4586 dbSNP
rs773329980 4597 dbSNP
rs1265728583 4611 dbSNP
rs750783379 4623 dbSNP
rs1236607236 4632 dbSNP
rs1330176834 4632 dbSNP
rs1482033032 4641 dbSNP
rs767872288 4642 dbSNP
rs1414194733 4645 dbSNP
rs1472243555 4651 dbSNP
rs924369212 4659 dbSNP
rs1404503163 4670 dbSNP
rs977174077 4673 dbSNP
rs762238728 4680 dbSNP
rs947153126 4681 dbSNP
rs1446016382 4686 dbSNP
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rs1425310239 10163 dbSNP
rs1219323936 10171 dbSNP
rs569368617 10196 dbSNP
rs35991216 10197 dbSNP
rs939935479 10206 dbSNP
rs758306053 10210 dbSNP
rs752563604 10212 dbSNP
rs909735238 10231 dbSNP
rs1032773301 10232 dbSNP
rs998633119 10232 dbSNP
rs188356344 10242 dbSNP
rs868402219 10247 dbSNP
rs755711088 10250 dbSNP
rs1487672746 10257 dbSNP
rs1024596209 10261 dbSNP
rs1186534386 10264 dbSNP
rs932423807 10273 dbSNP
rs759534666 10296 dbSNP
rs1222898202 10301 dbSNP
rs551015790 10308 dbSNP
rs1163446113 10310 dbSNP
rs920975639 10315 dbSNP
rs1228330230 10331 dbSNP
rs976393865 10357 dbSNP
rs1160456633 10371 dbSNP
rs965047351 10372 dbSNP
rs1400712378 10374 dbSNP
rs1020572815 10375 dbSNP
rs866954982 10378 dbSNP
rs1055009035 10381 dbSNP
rs988820760 10406 dbSNP
rs1318945731 10411 dbSNP
rs1450517906 10412 dbSNP
rs765942233 10414 dbSNP
rs1353522031 10417 dbSNP
rs916805700 10422 dbSNP
rs1002179442 10427 dbSNP
rs1238343543 10431 dbSNP
rs1288797441 10437 dbSNP
rs760167389 10447 dbSNP
rs748822073 10454 dbSNP
rs898558291 10454 dbSNP
rs958301456 10466 dbSNP
rs1032936241 10468 dbSNP
rs1237185204 10473 dbSNP
rs1366588354 10474 dbSNP
rs1002352215 10477 dbSNP
rs1180220671 10491 dbSNP
rs1380872511 10502 dbSNP
rs1434066385 10507 dbSNP
rs1170714181 10532 dbSNP
rs1400230662 10557 dbSNP
rs1416236687 10563 dbSNP
rs183647474 10585 dbSNP
rs1376358600 10588 dbSNP
rs905279212 10597 dbSNP
rs1352668374 10604 dbSNP
rs1311866852 10605 dbSNP
rs1378072031 10607 dbSNP
rs1233222165 10608 dbSNP
rs1051737544 10609 dbSNP
rs1330165804 10612 dbSNP
rs1025099506 10613 dbSNP
rs1465687185 10616 dbSNP
rs1200464473 10617 dbSNP
rs1402029931 10619 dbSNP
rs759209999 10623 dbSNP
rs761954655 10624 dbSNP
rs776649420 10627 dbSNP
rs1013675049 10628 dbSNP
rs934226991 10634 dbSNP
rs1173751220 10636 dbSNP
rs1431831476 10638 dbSNP
rs1379228621 10643 dbSNP
rs1479054978 10648 dbSNP
rs1173183213 10651 dbSNP
rs1323563216 10652 dbSNP
rs1399879423 10655 dbSNP
rs1424955236 10656 dbSNP
rs1464302613 10656 dbSNP
rs1192117501 10657 dbSNP
rs1333592334 10660 dbSNP
rs1479320929 10661 dbSNP
rs10617253 10662 dbSNP
rs1173182477 10662 dbSNP
rs1190500313 10662 dbSNP
rs1207783615 10662 dbSNP
rs1233375016 10662 dbSNP
rs1277061160 10662 dbSNP
rs1299832377 10662 dbSNP
rs1315500304 10662 dbSNP
rs1333279534 10662 dbSNP
rs1360859151 10662 dbSNP
rs1373798137 10662 dbSNP
rs1386562357 10662 dbSNP
rs1393283028 10662 dbSNP
rs1401556157 10662 dbSNP
rs1423070154 10662 dbSNP
rs1452070774 10662 dbSNP
rs1476875690 10662 dbSNP
rs532972014 10662 dbSNP
rs576761361 10662 dbSNP
rs58768895 10662 dbSNP
rs769453952 10662 dbSNP
rs770037340 10662 dbSNP
rs781214715 10662 dbSNP
rs781592826 10662 dbSNP
rs869251283 10662 dbSNP
rs879020944 10662 dbSNP
rs1236875425 10663 dbSNP
rs897853504 10669 dbSNP
rs1298104679 10671 dbSNP
rs1198090598 10678 dbSNP
rs771682142 10696 dbSNP
rs1278456558 10720 dbSNP
rs1260263626 10722 dbSNP
rs761333301 10724 dbSNP
rs774791063 10725 dbSNP
rs1267037465 10733 dbSNP
rs1356763618 10735 dbSNP
rs935638724 10739 dbSNP
rs1215878076 10741 dbSNP
rs1048706874 10747 dbSNP
rs1260931077 10752 dbSNP
rs192189845 10753 dbSNP
rs749870799 10754 dbSNP
rs1423427579 10768 dbSNP
rs976508561 10769 dbSNP
rs189132049 10782 dbSNP
rs967566323 10796 dbSNP
rs1425679736 10802 dbSNP
rs1308360036 10803 dbSNP
rs185456953 10805 dbSNP
rs987796021 10806 dbSNP
rs750763707 10819 dbSNP
rs746933409 10833 dbSNP
rs1393977989 10845 dbSNP
rs980943416 10868 dbSNP
rs1340913017 10876 dbSNP
rs958590645 10877 dbSNP
rs969584587 10879 dbSNP
rs745909716 10881 dbSNP
rs1218933954 10884 dbSNP
rs1261433642 10896 dbSNP
rs768039437 10900 dbSNP
rs1359368120 10904 dbSNP
rs1445631750 10912 dbSNP
rs962093211 10931 dbSNP
rs781376929 10949 dbSNP
rs1177329281 10951 dbSNP
rs1015360143 10955 dbSNP
rs1006185271 10965 dbSNP
rs1016929642 10969 dbSNP
rs1004294939 10970 dbSNP
rs1304232757 10973 dbSNP
rs888370625 10975 dbSNP
rs1406286839 10981 dbSNP
rs1445809797 10983 dbSNP
rs1048341609 10985 dbSNP
rs757519292 11006 dbSNP
rs1379012543 11008 dbSNP
rs1051235158 11020 dbSNP
rs996714356 11024 dbSNP
rs1440434816 11026 dbSNP
rs751677677 11027 dbSNP
rs1208038926 11028 dbSNP
rs899697515 11031 dbSNP
rs1039959055 11042 dbSNP
rs936274746 11047 dbSNP
rs1236787211 11048 dbSNP
rs925600409 11051 dbSNP
rs977498698 11059 dbSNP
rs778778264 11065 dbSNP
rs1430968929 11068 dbSNP
rs754728471 11069 dbSNP
rs1406406447 11075 dbSNP
rs755487961 11085 dbSNP
rs1328850723 11094 dbSNP
rs1402272030 11100 dbSNP
rs1351163042 11140 dbSNP
rs992647589 11141 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Jiyoye
Tools used in this research TargetScan
Original Description (Extracted from the article) ... HITS-CLIP data was present in Supplenentary. RNA binding protein: AGO2. ...

- Riley KJ; Rabinowitz GS; Yario TA; Luna JM; et al., 2012, The EMBO journal.

Article - Riley KJ; Rabinowitz GS; Yario TA; Luna JM; et al.
- The EMBO journal, 2012
Epstein-Barr virus (EBV) controls gene expression to transform human B cells and maintain viral latency. High-throughput sequencing and crosslinking immunoprecipitation (HITS-CLIP) identified mRNA targets of 44 EBV and 310 human microRNAs (miRNAs) in Jijoye (Latency III) EBV-transformed B cells. While 25% of total cellular miRNAs are viral, only three viral mRNAs, all latent transcripts, are targeted. Thus, miRNAs do not control the latent/lytic switch by targeting EBV lytic genes. Unexpectedly, 90% of the 1664 human 3'-untranslated regions targeted by the 12 most abundant EBV miRNAs are also targeted by human miRNAs via distinct binding sites. Half of these are targets of the oncogenic miR-17 approximately 92 miRNA cluster and associated families, including mRNAs that regulate transcription, apoptosis, Wnt signalling, and the cell cycle. Reporter assays confirmed the functionality of several EBV and miR-17 family miRNA-binding sites in EBV latent membrane protein 1 (LMP1), EBV BHRF1, and host CAPRIN2 mRNAs. Our extensive list of EBV and human miRNA targets implicates miRNAs in the control of EBV latency and illuminates viral miRNA function in general.
LinkOut: [PMID: 22473208]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.724 1.5e-4 0.768 3.8e-5 20 Click to see details
GSE21687 Ependynoma primary tumors -0.314 5.8e-3 -0.308 6.6e-3 64 Click to see details
GSE32688 Pancreatic cancer 0.427 7.4e-3 0.415 9.1e-3 32 Click to see details
GSE42095 Differentiated embryonic stem cells -0.498 7.8e-3 -0.581 1.8e-3 23 Click to see details
GSE21032 Prostate cancer -0.221 2.2e-2 -0.148 9.1e-2 83 Click to see details
GSE19783 ER- ER- breast cancer 0.193 4.4e-2 0.182 5.4e-2 79 Click to see details
GSE19536 Breast cancer 0.158 5.8e-2 0.134 9.2e-2 100 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.293 7.8e-2 -0.275 9.2e-2 25 Click to see details
GSE17306 Multiple myeloma 0.195 9.0e-2 0.238 5.0e-2 49 Click to see details
GSE38226 Liver fibrosis 0.296 9.6e-2 0.391 4.0e-2 21 Click to see details
GSE27834 Pluripotent stem cells -0.327 1.1e-1 -0.221 2.1e-1 16 Click to see details
GSE28544 Breast cancer 0.231 1.4e-1 -0.040 4.3e-1 24 Click to see details
GSE26953 Aortic valvular endothelial cells -0.175 2.1e-1 -0.122 2.9e-1 24 Click to see details
GSE17498 Multiple myeloma -0.103 2.6e-1 -0.145 1.9e-1 40 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.122 2.8e-1 0.230 1.3e-1 25 Click to see details
GSE21849 B cell lymphoma 0.112 2.8e-1 0.161 2.0e-1 29 Click to see details
GSE19350 CNS germ cell tumors 0.144 3.3e-1 0.378 1.1e-1 12 Click to see details
GSE14794 Lymphoblastoid cells 0.034 3.8e-1 0.093 1.9e-1 90 Click to see details
GSE28260 Renal cortex and medulla 0.072 4.1e-1 -0.016 4.8e-1 13 Click to see details
GSE19783 ER+ ER+ breast cancer -0.054 4.1e-1 0.078 3.7e-1 20 Click to see details
GSE19783 ER+ ER+ breast cancer -0.054 4.1e-1 0.078 3.7e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD 0.669 0 0.709 0 32 Click to see details
PAAD 0.985 0.01 0.800 0.1 4 Click to see details
THCA 0.285 0.01 0.230 0.04 59 Click to see details
KIRC 0.212 0.04 0.234 0.03 68 Click to see details
ESCA -0.523 0.05 -0.282 0.2 11 Click to see details
CHOL -0.528 0.07 -0.533 0.07 9 Click to see details
UCEC 0.321 0.09 0.177 0.23 19 Click to see details
HNSC 0.203 0.1 0.212 0.09 42 Click to see details
LUAD 0.362 0.12 0.196 0.27 12 Click to see details
PCPG -0.92 0.13 -0.500 0.33 3 Click to see details
KIRP 0.186 0.15 0.239 0.09 32 Click to see details
CESC 0.87 0.16 0.500 0.33 3 Click to see details
LUSC -0.157 0.17 -0.174 0.15 38 Click to see details
KICH 0.193 0.18 0.223 0.14 25 Click to see details
COAD -0.31 0.23 -0.476 0.12 8 Click to see details
BLCA 0.163 0.26 0.183 0.23 18 Click to see details
PRAD -0.088 0.27 -0.020 0.45 50 Click to see details
LIHC -0.068 0.32 -0.085 0.28 49 Click to see details
BRCA -0.039 0.36 -0.036 0.37 84 Click to see details
BRCA -0.039 0.36 -0.036 0.37 84 Click to see details
BRCA -0.039 0.36 -0.036 0.37 84 Click to see details
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
691 hsa-miR-15a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000280 BMI1 BMI1 proto-oncogene, polycomb ring finger 5 3
MIRT000282 WNT3A Wnt family member 3A 3 2
MIRT000283 MYB MYB proto-oncogene, transcription factor 5 3
MIRT000284 CDC25A cell division cycle 25A 3 3
MIRT000285 CCND2 cyclin D2 3 5
MIRT000804 RAB9B RAB9B, member RAS oncogene family 1 1
MIRT000806 ACTR1A ARP1 actin related protein 1 homolog A 1 1
MIRT000808 TPI1 triosephosphate isomerase 1 1 1
MIRT000810 PDCD4 programmed cell death 4 3 2
MIRT000812 RAB21 RAB21, member RAS oncogene family 2 1
MIRT000815 BCL2 BCL2, apoptosis regulator 6 13
MIRT000817 WT1 Wilms tumor 1 2 1
MIRT000819 ASXL2 additional sex combs like 2, transcriptional regulator 2 1
MIRT000823 TMEM251 transmembrane protein 251 2 1
MIRT000825 CARD8 caspase recruitment domain family member 8 2 1
MIRT000827 CDC14B cell division cycle 14B 2 1
MIRT000829 CENPJ centromere protein J 2 1
MIRT000831 CEP63 centrosomal protein 63 2 1
MIRT000833 CREBL2 cAMP responsive element binding protein like 2 3 3
MIRT000835 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 1
MIRT000847 GOLGA5 golgin A5 2 1
MIRT000849 GOLPH3L golgi phosphoprotein 3 like 2 1
MIRT000851 GTF2H1 general transcription factor IIH subunit 1 2 1
MIRT000853 H3F3B H3 histone family member 3B 2 1
MIRT000855 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 1
MIRT000857 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 1
MIRT000859 HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 2 1
MIRT000863 HRSP12 reactive intermediate imine deaminase A homolog 2 1
MIRT000865 HSDL2 hydroxysteroid dehydrogenase like 2 2 1
MIRT000866 HSPA1A heat shock protein family A (Hsp70) member 1A 2 1
MIRT000868 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 1
MIRT000878 MCL1 MCL1, BCL2 family apoptosis regulator 2 1
MIRT000880 MSH2 mutS homolog 2 2 1
MIRT000884 OMA1 OMA1 zinc metallopeptidase 2 1
MIRT000886 OSGEPL1 O-sialoglycoprotein endopeptidase like 1 2 1
MIRT000888 PDCD6IP programmed cell death 6 interacting protein 2 1
MIRT000890 PHKB phosphorylase kinase regulatory subunit beta 2 1
MIRT000892 PMS1 PMS1 homolog 1, mismatch repair system component 2 1
MIRT000894 PNN pinin, desmosome associated protein 2 1
MIRT000896 PRIM1 DNA primase subunit 1 2 1
MIRT000898 RAD51C RAD51 paralog C 2 1
MIRT000900 RHOT1 ras homolog family member T1 2 1
MIRT000902 RNASEL ribonuclease L 2 1
MIRT000906 SLC35A1 solute carrier family 35 member A1 2 1
MIRT000908 SLC35B3 solute carrier family 35 member B3 2 1
MIRT000910 TIA1 TIA1 cytotoxic granule associated RNA binding protein 2 1
MIRT000914 UGDH UDP-glucose 6-dehydrogenase 2 1
MIRT000916 UGP2 UDP-glucose pyrophosphorylase 2 2 1
MIRT000922 ZNF559 zinc finger protein 559 2 1
MIRT001227 CCND1 cyclin D1 5 7
MIRT001228 CCNE1 cyclin E1 6 8
MIRT001802 BACE1 beta-secretase 1 2 1
MIRT002946 DMTF1 cyclin D binding myb like transcription factor 1 3 3
MIRT003333 BRCA1 BRCA1, DNA repair associated 2 2
MIRT003334 AKT3 AKT serine/threonine kinase 3 2 4
MIRT003872 WIPF1 WAS/WASL interacting protein family member 1 2 1
MIRT003873 VPS45 vacuolar protein sorting 45 homolog 2 1
MIRT003874 HSP90B1 heat shock protein 90 beta family member 1 2 1
MIRT003875 SKAP2 src kinase associated phosphoprotein 2 3 1
MIRT003876 NT5DC1 5'-nucleotidase domain containing 1 2 1
MIRT003877 FAM69A family with sequence similarity 69 member A 2 1
MIRT003878 C2orf74 chromosome 2 open reading frame 74 1 1
MIRT003879 FAM122C family with sequence similarity 122C 2 1
MIRT003880 PWWP2A PWWP domain containing 2A 2 1
MIRT003881 C17orf80 chromosome 17 open reading frame 80 2 1
MIRT003882 CCDC111 primase and DNA directed polymerase 2 1
MIRT003883 C2orf43 lipid droplet associated hydrolase 2 1
MIRT003884 C4orf27 histone PARylation factor 1 2 1
MIRT003885 NIPAL2 NIPA like domain containing 2 2 1
MIRT003886 TRMT13 tRNA methyltransferase 13 homolog 2 1
MIRT003887 ANAPC16 anaphase promoting complex subunit 16 2 1
MIRT003888 CADM1 cell adhesion molecule 1 3 1
MIRT003891 TMEM184B transmembrane protein 184B 2 1