Gene Symbol
TP53
Synonyms
BCC7, LFS1, P53, TRP53
Description
tumor protein p53
Transcript
NM_001126114
Other Transcripts
NM_001126112
,
NM_000546
,
NM_001126113
,
NM_001126115
,
NM_001126116
,
NM_001126117
Expression
Putative miRNA Targets on TP53
3'UTR of TP53 (miRNA target sites are highlighted)
>TP53|NM_001126114|3'UTR
1 AGAG AG C ATG AA AA T G G TTC TA T G A CTTTG C CTG ATA CA GATGC TA C TT GAC T TA C G A T GG T G TTAC TTCC T GAT AAA C T
81 C G T C G T A A G T T GAAA ATATT ATC CGTGGGCG TG A GC GCTT CG AG AT GTTCC GAGAG CTGAATG AG GC CT TGGAAC TCAA G
161 G A T GC CC AGGCTGGG AAGG A GC C A GGG GGG AG CAG GGCTCAC T CCAGCCACC TGAAGT CCAA AAA G G GT CAGT C TACCTC
241 C CG CCATA A A A AACTC A T GT TCAA G AC A GAAGGGCC T GACT CAGACTGA CATTCT CCACTTCTTGTTCC CC ACT GACA G C
321 C T CCCAC CCCC ATCTC TC CC T C C CC T G C C A T T T TGGGTTTT G GGTCT TTGAAC CCTTGC T TGCAATAG GTGTGCG TCAGA
401 A GCA CCCAGGA CTTC CAT TTGCTTTGTC CC G GGGCTCCACTGAACAAGTTGGCCTGCA C TG GT G T TTT GT T G T G G GGAG G
481 A GGATG GGGAGTAGGACAT ACCAGCTTAGA TTTT AAGGTTT TTACTGTGAGGGATGTTTGGGAG ATGT AAGA AATGTTCT
561 TGCA GTTA AGGGTT AGTTTACA ATCAGCCA CA TTCTAGGTAG GGGCC CA C TTC ACCGTACTA A C CA GGGAAGCTGTC CCT
641 CA CT GTTGA ATT TTCTCT AACTTCAA GGC CC AT ATCT GTG A A A TG CTGG CA TTTGCA CCTACCT CA CA GA GTGCATTGTG
721 AGGGTTAATGAAATAAT GT ACATCT GGCCT T GA A A C CACC TT TTATT ACATGGGG TC TA GA ACTTGA CCC C CTT GAGGGT
801 GCT T G TTC CCTCTCCCTGTTGG TCGGTGGGTT G GTA GT TTCTACAGTTGGGCAG CT G GTTAGGT AGAGGGAG TTGTCAAG
881 TCTCTGCTGGCC CAGCCAAACCCTGTCTGACAACCTCTTGGTGAACCTTAGTACCTAAAAGGAAATCTCACCCCATCCCA
961 CACCCTGGAGGATTTCATCTCTTGTATATGATGATCTGGATCCACCAAGACTTGTTTTATGCTCAGGGTCAATTTCTTTT
1041 TTCTTTTTTTTTTTTTTTTTTCTTTTTCTTTGAGACTGGGTCTCGCTTTGTTGCCCAGGCTGGAGTGGAGTGGCGTGATC
1121 TTGGCTTACTGCAGCCTTTGCCTCCCCGGCTCGAGCAGTCCTGCCTCAGCCTCCGGAGTAGCTGGGACCACAGGTTCATG
1201 CCACCATGGCCAGCCAACTTTTGCATGTTTTGTAGAGATGGGGTCTCACAGTGTTGCCCAGGCTGGTCTCAAACTCCTGG
1281 GCTCAGGCGATCCACCTGTCTCAGCCTCCCAGAGTGCTGGGATTACAATTGTGAGCCACCACGTCCAGCTGGAAGGGTCA
1361 ACATCTTTTACATTCTGCAAGCACATCTGCATTTTCACCCCACCCTTCCCCTCCTTCTCCCTTTTTATATCCCATTTTTA
1441 TATCGATCTCTTATTTTACAATAAAACTTTGCTGCCA CCTGTGTGTCTGAGGGGTG
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA 3' guguuUGGUAAU---ACACGACGau 5'
|| || | | ||||||
Target 5' attttACAATAAAACTTTGCTGCca 3'
1453 - 1477
129.00
-8.50
2
miRNA 3' guGUUU--GGUA---AUAC---ACGACgau 5'
|||: |||| |:|| |||||
Target 5' ttCAAGGCCCATATCTGTGAAATGCTGgca 3'
662 - 691
118.00
-12.90
3
miRNA 3' guGUUUGGUAAUACACGACgau 5'
|||::| | |||||
Target 5' gtCAAGTC----TCTGCTGgcc 3'
875 - 892
110.00
-8.50
DRVs in gene 3'UTRs
SNPs in gene 3'UTRs