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miRTarBase - #MIRT003334 -
pre-miRNA Information
pre-miRNA hsa-mir-15a   
Genomic Coordinates chr13: 50049119 - 50049201
Synonyms MIRN15A, hsa-mir-15a, miRNA15A, MIR15A
Description Homo sapiens miR-15a stem-loop
Comment Reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-15a-5p
Sequence 14| UAGCAGCACAUAAUGGUUUGUG |35
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1355089203 8 dbSNP
rs753467375 11 dbSNP
rs923737993 12 dbSNP
rs766120172 20 dbSNP
rs1359939022 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol AKT3   
Synonyms MPPH, MPPH2, PKB-GAMMA, PKBG, PRKBG, RAC-PK-gamma, RAC-gamma, STK-2
Description AKT serine/threonine kinase 3
Transcript NM_005465   
Other Transcripts NM_181690   
Expression
Putative miRNA Targets on AKT3
3'UTR of AKT3
(miRNA target sites are highlighted)		 
>AKT3|NM_005465|3'UTR
   1 GTCTCTTTCATTCTGCTACTTCACTGTCATCTTCAATTTATTACTGAAAATGATTCCTGGACATCACCAGTCCTAGCTCT
  81 TACACATAGCAGGGGCACCTTCCGACATCCCAGACCAGCCAAGGGTCCTCACCCCTCGCCACCTTTCACCCTCATGAAAA
 161 CACACATACACGCAAATACACTCCAGTTTTTGTTTTTGCATGAAATTGTATCTCAGTCTAAGGTCTCATGCTGTTGCTGC
 241 TACTGTCTTACTATTATAGCAACTTTAAGAAGTAATTTTCCAACCTTTGGAAGTCATGAGCCCACCATTGTTCATTTGTG
 321 CACCAATTATCATCTTTTGATCTTTTAGTTTTTCCCTCAGTGAAGGCTAAATGAGATACACTGATTCTAGGTACATTTTT
 401 TAACTTTCTAGAAGAGAAAAACTAACTAGACTAAGAAGATTTAGTTTATAAATTCAGAACAAGCAATTGTGGAAGGGTGG
 481 TGGCGTGCATATGTAAAGCACATCAGATCCGTGCGTGAAGTAGGCATATATCACTAAGCTGTGGCTGGAATTGATTAGGA
 561 AGCATTTGGTAGAAGGACTGAACAACTGTTGGGATATATATATATATATATAATTTTTTTTTTTTAAATTCCTGGTGGAT
 641 ACTGTAGAAGAAGCCCATATCACATGTGGATGTCGAGACTTCACGGGCAATCATGAGCAAGTGAACACTGTTCTACCAAG
 721 AACTGAAGGCATATGCACAGTCAAGGTCACTTAAAGGGTCTTATGAAACAATTTGAGCCAGAGAGCATCTTTCCCCTGTG
 801 CTTGGAAACCTTTTTTCCTTCTTGACATTTATCACCTCTGATGGCTGAAGAATGTAGACAGGTATAATGATACTGCTTTT
 881 CACCAAAATTTCTACACCAAGGTAAACAGGTGTTTGCCTTATTTAATTTTTTACTTTCAGTTCTACGTGAATTAGCTTTT
 961 TCTCAGATGTTGAAACTTTGAATGTCCTTTTATGATTTTGTTTATATTGCAGTAGTATTTATTTTTTAGTGATGAGAATT
1041 GTATGTCATGTTAGCAAACGCAGCTCCAACTTATATAAAATAGACTTACTGCAGTTACTTTTGACCCATGTGCAAGGATT
1121 GTACACGCTGATGAGAATCATGCACTTTTTCTCCTCTGTTAAAAAAAATGATAAGGCTCTGAAATGGAATATATTGGTTA
1201 GAATTTGGCTTTGGGAGAAGAGATGCTGCCATTTAACCCCTTGGTACTGAAAATGAGAAAATCCCCAACTATGCATGCCA
1281 AGGGGTTAATGAAACAAATAGCTGTTGACGTTTGCTCATTTAAGAATTTGAAACGTTATGATGACCTGGCAACAAAAAGT
1361 AATGAAGAAAATTGAGACCTGAGTGAAGATAAGAAATGATCTTTACGTGGCAAAATGAACACATCTTGAGTATTTAGGAA
1441 ATGGGCAGTGAAGGCTAAGAACCTGGTGTGTTTCTTGGGATCATGGTACATTTATCACTGAATTAAGCCATCAGGGAAAA
1521 AACAACAAAAAAAGAGAACACCTCCAGCTTTTCTTTTTCTGTATATACTCATGTCCCCCAGATTCCAACATTTCTCACTG
1601 AAAGGGGGCATGTATGCAAACCTCATCTTTCTCCTTCATTAATGATGATCTTCAGATTAAACCCTTTGGTGCTAGGAGCT
1681 GACAATTTCCAAAGCAGCCTGTGAAGTCCTAGGGGCTGGGGGCCACTCTTGCGGCAAGCAGAAGGCCATCCTACTCCGCG
1761 GAGTGATCATGGAAATGTATTTTAGTTAAACTCTGACAGCTCCCAAACGGAAGACTACAGCATGACGTAGTATTATGATT
1841 GCATTGTATGAAAGAGCAAGTGACTTTCTAAGTAGGATGAATCATATTCATATGCAGATGTCTTAGCCTCTTGACGCTGG
1921 AAGTGTGGATTTATAGCTATGAAACCACTGCTGGCAGTGGGTGGGCCACTGGGACTGACGGGGGTTAAAGGGCATTTTAC
2001 TAAGGCAGCTAAGACATATTCAGACATCAACGTTATCCTTCTTTTTCATATTTCTACCTGAGTGAAGTTCATCCTTAGTA
2081 TTGAGTAGGAAGTTACAGTAAATGGTAGTTCATTCTTACTTACACACATAGCTAATCTTTTTTTTTTCACTTGGAATTAT
2161 GTTGAATGTTTCATTTTGACAAAAAAGTAGACTAGAAGGTATGTTCTTTAAGTTGTCTTGCATCCATTATATAAGAAAGA
2241 AACAGGTGAGAGGAAGAGCAGAAAGCTGAGACTGGCTGATGTTCAGAGCACTTACTCCTCTAGAGGGAAAGCATGACACC
2321 GAACACTAAGCACACAGCTTTTTGTTGTTTTGGTTTTTTCTCCCGCAAATCTTAAAGTGATTCCCATGACCTTGGCCAAG
2401 GACACTTCTTAAAGATTAATGACTGGCACTGACATTGCCCCAGGCGGGCCACTCCTCACACTGGCTCTCAGTTCCCAGCC
2481 ATGCCTGGGGCTCAGTCACTTCTATTCCACCCTCTGAGACTCCATTGGTGTCACACAAGGTGTCTTCTTGGCTTTGATTT
2561 TGAGAATCCCCTATTTTCACTTCCAGATCTGTCAGCTGCCATGGAGGAATAATAGAAAACCAGAAATGCGTGTAGAGGGA
2641 GATTTCTAAAACTTCCCTTGTGTCGCCCATAGTTGTAGTTTTGGGTTCTGGCAGGTGGAACACCCTGAAACCTGGAATCA
2721 TTCTATGAGAATACAGTTCAGACTTTGCAGACTCCAGCCCATACTAACTGTCATGAAGCTTGACTTCTTGTCATAATGCA
2801 GCCATCTTGGAGGAAATTGGCCATTTCTGCTTAGATGGTTGGCAGGGTCGCGCTCAGCTTTGCTTTCTACACTAATTACA
2881 TAGCATTATTCAAGTATTGTTTTCCATTTCCCATCCCTGATTTCCAGCTTCTTAAAGCTGACTGTTCTTGCAGGGGCCAC
2961 TTGCTTCTCCTAGAGTACAAAAGTAAGGGCCTTCCTTACTAACTGCAGGGTCTCTCTATTACACCTCAACATACACACTT
3041 TGCTGCTACTGTTTGTACTGTCTACAGTAGAATTTCCTTATCTTGCTCCTGGTAGTGCATTACAGGCAAGCATGAAATGT
3121 AAAGTATTTATTTAAATAAAAAGAAAACCTCTAAATTGGTAATTGAATTACCTCCCTGTAGCTTTATAGTTTGTGACATT
3201 TCTTGACCTTGCTAGTTCTTTCATTAGATCTGCGCAAGATCTAGTCATCTGGTTAAGGATTTTAAGCAGATGCAACTATA
3281 AACCCAAGAAACTGTATTACTATTACTGTTGGTCATACTAAACCTGTCTATTTCCTGAAGTATATGACCCACAAGGATGT
3361 GGAATAACTAGGAGAAACTGTTTTTGTACACTGTACATCCTTAGTATTTTTACACGTATATGATAGGGATGAACATGATT
3441 TTCCTTCGTACAGACAGCTTAAATAAAGCACTATGTCAATCTGCTACTTCTCTGTTTATTGTTGTTGGATGTGGTTCTAT
3521 AATCCCCCCAAATTAAATCTTCTTTAATGAAAACATGATTTTTAATAGCCCCAGCTGGTATTAACCTACCTTGTATAAAA
3601 TGTGACAGGAAAATATAGAAATAATTCCTTGTAGCTCACACACACACACATAGGGGATCATTTTTACTTCAGTGAAATGG
3681 CAGTAGTGCGGTTGTGCAAACTTTGATGAACGGCTGCTTCTGAGGGGAAACGCTGACCTCTCAGCACTGGATTTAGGATG
3761 GATGTACTGTGAAGCCAGGGATGAAGGAGGTCTCAGACCCTGGGGACATTCAGACCCGAATCATCTATACAACACACGGT
3841 TTGGACCCAGAATCTGAAGGAATGTAGCTTTTCATTAACGTCTTCCTGATAATGTACTGCTCTGCATATTTCCTTTCTTA
3921 GAGTGTATTTCTAACAACATGTCATGGCAAATTAACAAACTTAGACGTGGGTGATGTAGATGGGTAGGATGGCTGGACTG
4001 CAGTCTGACTTCACGTTGAATCATTCTGGATGGGGCCTTTTTCTGATTTTACCTCATAAAGCTACTATTGTAGAAACTTG
4081 GCTTTGCTCCTGTGACGAAGCCAGACAGAGGAATGGCTTTTGGGACCAGAGTGAGTCAAGCATGTATGTGTATGTCACAC
4161 GGCCAAATTTGAGGGCATTCTCACATGTGCTCTTCTCTCAAAACCACTGGGGTTGACAGATCCAGGAGGCTAAAAAAAAG
4241 TGACCTCTATAATTCTTTAAAGGTGCTATTTTTAGAATATTGTATAATTTATTCACAGTATATCTAAAACAGAATTAAGG
4321 ACAATTAAAATATCTTATGTGACAGCCTTTATGTCTAGCACATTTGATGAAATAAAAAACTTCTGAATCTGAATAGAAGT
4401 TCTACTGTTTCAGGCTTGAACCTTTTACATGCTCAAGAGATTCAAATGGTCTCTGTGTGTAGATCATGCCACCGCCTCCA
4481 AAGCCTAATCCACATCACTTCTGAGAGGCAAGGCTGAGCATATGGTGACATCAGCTCTGTGTTGAGATGGTGATGAGGAT
4561 GATGGCTCGCTGGCCAGGCAGGGCAGCCGAAGGTCAGGGACCTGTCCTAACTAACTGCAGCCTTGCCTTTAGTGTTTGTC
4641 ATTCTCAGATACAACACGGTATGTCCAGTGTCCGTTTTTATTACTTTAAAGCATTTGAGGGCTTAATTGTGTATAGTAGA
4721 AATACTATTTTAGACAAATAATTATCTGTGTACAGATATTTGATATACTCTAAGTAAATTTTCTAATTTCACTAAGTACG
4801 TTTTTAGGCTCCTCTCAAATACTGCGTATTGAAGAAAAAAATCTGACACCACCGAGCCAAAGATGCTTTTTTGTCTGTTT
4881 TCGTTGTTTAACAGAATGGAAAGAGTAATGCATAGTGCTTCCTGGTGTCTCCTGATTGATTGATTGTGCACAAAGTAGGA
4961 CGATAAATAAATAAAATGGAGTCTGATGGGACATTGATTAAAGGTGAAGGATGATTGATATATAGATCATGAAAAGAAAA
5041 ATGAATGGCAGGAAAAAAAGTTTGGTCCTTAATATACTTTGGCCTAGTTAAAATATGTGCCTTTTTGGTGTGTTTTGTTC
5121 ATCACTACAAGATAAAAAGGAAACATTACAACTCAAGTCTTTAAAAAGTTCATTTATTGAAAATCATATGTATAACCTAG
5201 CATACGAATGAGCAGATTTAAACACATAACTTCAAGCCATTTCTGAAAACATACACCAGGAGCTCTGCTCAGCTAGAGTC
5281 AGACTCCAGCTCCAGCCCGACTGCGTGCGGGGACAGCGCCCGCGTTGATGAGGACCAGCCCCACTGCAGGCTGAGGCGGT
5361 GTCACCCTGGGAAGGTCGTGGTGCGTTGTGGCATATTAAGTCTAAACCAGATGAATGTAAATATCTCTTTGTAAATCATT
5441 TATTTCACTCTGTTCCATCCAGGTCAGCAATCAGATTGTGGCATGCTGGGTAACTGGAAAAAATAATAAAAAGTAAGTTT
5521 CAATAGCTCAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1 
miRNA  3' guguuuGGUAAUAC-ACGACGAu 5'
                :|||  || ||||||| 
Target 5' aaggtcTCATGCTGTTGCTGCTa 3'
 		220 - 242 152.00 -13.60
2 
miRNA  3' guGUUUG-GUAAUACACGACGAu 5'
            || || || | | ||||||| 
Target 5' aaCATACACACT-T-TGCTGCTa 3'
 		3028 - 3048 150.00 -12.90
3 
miRNA  3' guGUUUGGUAAUAC---ACGACGAu 5'
            |||||: | |||    |||||| 
Target 5' tgCAAACTTTGATGAACGGCTGCTt 3'
 		3695 - 3719 136.00 -15.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
387204 7 ClinVar
296922 5160 ClinVar
296921 5177 ClinVar
296920 5252 ClinVar
296919 5315 ClinVar
296918 5367 ClinVar
296917 5403 ClinVar
853144 5484 ClinVar
COSN30521347 5 COSMIC
COSN30185556 13 COSMIC
COSN31486454 22 COSMIC
COSN30148892 28 COSMIC
COSN28816008 65 COSMIC
COSN25052855 67 COSMIC
COSN31552909 86 COSMIC
COSN25539116 115 COSMIC
COSN31586428 139 COSMIC
COSN31485814 188 COSMIC
COSN21953840 408 COSMIC
COSN22423699 421 COSMIC
COSN8452850 421 COSMIC
COSN30108173 611 COSMIC
COSN25109943 674 COSMIC
COSN31591422 796 COSMIC
COSN30268237 881 COSMIC
COSN31571317 887 COSMIC
COSN31539851 909 COSMIC
COSN31544801 1039 COSMIC
COSN17327665 1071 COSMIC
COSN15660406 1187 COSMIC
COSN31571315 1222 COSMIC
COSN5202726 1239 COSMIC
COSN15894832 1261 COSMIC
COSN31543742 1310 COSMIC
COSN28664457 1335 COSMIC
COSN19656930 1503 COSMIC
COSN24297735 1575 COSMIC
COSN31541233 1617 COSMIC
COSN31528048 1715 COSMIC
COSN29166323 1732 COSMIC
COSN31578935 1755 COSMIC
COSN31521812 1786 COSMIC
COSN19446184 1827 COSMIC
COSN20096202 1853 COSMIC
COSN30543621 1942 COSMIC
COSN1440245 1958 COSMIC
COSN31516005 2032 COSMIC
COSN27363893 2137 COSMIC
COSN31535474 2178 COSMIC
COSN7213175 2217 COSMIC
COSN5369593 2525 COSMIC
COSN29094002 2905 COSMIC
COSN8452849 3067 COSMIC
COSN1440244 3411 COSMIC
COSN8452848 4763 COSMIC
COSN4749577 4933 COSMIC
COSN28870851 5318 COSMIC
COSN31502318 5330 COSMIC
COSN31560700 5347 COSMIC
COSN30712282 5356 COSMIC
COSN30751536 5399 COSMIC
COSN23177651 5411 COSMIC
COSN30104708 5415 COSMIC
COSM7094679 5493 COSMIC
COSM7094677 5500 COSMIC
COSM6062432 5505 COSMIC
COSN26965721 5509 COSMIC
COSN26392492 5514 COSMIC
COSN213389 5515 COSMIC
rs9428966 651 GWAS
rs67027895 1335 GWAS
rs34770086 1856 GWAS
rs1058305 3909 GWAS
rs14403 4658 GWAS
rs145504297 4946 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766019860 3 dbSNP
rs746704800 4 dbSNP
rs769005975 4 dbSNP
rs543291675 7 dbSNP
rs370750588 9 dbSNP
rs918344063 9 dbSNP
rs764600594 10 dbSNP
rs1184602716 15 dbSNP
rs1480409905 19 dbSNP
rs761768321 24 dbSNP
rs753649886 28 dbSNP
rs1328222784 36 dbSNP
rs763992613 40 dbSNP
rs775103000 41 dbSNP
rs192105293 44 dbSNP
rs552302039 45 dbSNP
rs1208690839 50 dbSNP
rs768201175 56 dbSNP
rs958725921 67 dbSNP
rs781391076 77 dbSNP
rs1430430535 79 dbSNP
rs114728802 85 dbSNP
rs1309249426 89 dbSNP
rs1157582039 91 dbSNP
rs1018048352 92 dbSNP
rs557020197 103 dbSNP
rs1348927637 104 dbSNP
rs1363775802 114 dbSNP
rs1407065453 115 dbSNP
rs1303918815 116 dbSNP
rs1349667269 117 dbSNP
rs1221812326 122 dbSNP
rs985366925 127 dbSNP
rs187407614 137 dbSNP
rs1323370745 138 dbSNP
rs1002951735 142 dbSNP
rs907036161 143 dbSNP
rs550667375 144 dbSNP
rs1289037896 154 dbSNP
rs1036163793 171 dbSNP
rs746726491 172 dbSNP
rs1010910652 173 dbSNP
rs1480527945 176 dbSNP
rs1175887870 186 dbSNP
rs892460681 187 dbSNP
rs1031120360 195 dbSNP
rs1005125780 207 dbSNP
rs1166300526 211 dbSNP
rs771057786 215 dbSNP
rs1004024259 218 dbSNP
rs887672158 221 dbSNP
rs1472511042 236 dbSNP
rs1409933147 237 dbSNP
rs1164478313 240 dbSNP
rs879610006 244 dbSNP
rs1049479371 251 dbSNP
rs931649369 257 dbSNP
rs1299722297 259 dbSNP
rs1373775531 267 dbSNP
rs1451824096 282 dbSNP
rs1483530974 283 dbSNP
rs1360999711 284 dbSNP
rs1246308733 290 dbSNP
rs1219603175 291 dbSNP
rs1246020085 300 dbSNP
rs1273239922 303 dbSNP
rs921638257 305 dbSNP
rs1206166205 307 dbSNP
rs370949990 318 dbSNP
rs1290258335 321 dbSNP
rs1183533663 323 dbSNP
rs1208037855 324 dbSNP
rs557784596 326 dbSNP
rs1289743139 333 dbSNP
rs1446556340 348 dbSNP
rs944407476 353 dbSNP
rs534559707 364 dbSNP
rs977591163 366 dbSNP
rs1354905388 373 dbSNP
rs183115836 376 dbSNP
rs771792175 382 dbSNP
rs1384955963 384 dbSNP
rs1453255453 391 dbSNP
rs1049081021 408 dbSNP
rs372332395 410 dbSNP
rs1272740443 412 dbSNP
rs990829608 419 dbSNP
rs1351988357 423 dbSNP
rs1326989799 425 dbSNP
rs918237068 426 dbSNP
rs1203392787 429 dbSNP
rs70961726 429 dbSNP
rs1457228187 430 dbSNP
rs1463090326 433 dbSNP
rs867294808 453 dbSNP
rs1241670369 455 dbSNP
rs45498504 461 dbSNP
rs192817317 479 dbSNP
rs188008375 480 dbSNP
rs1034346977 485 dbSNP
rs1480214049 486 dbSNP
rs1174055688 487 dbSNP
rs779300358 502 dbSNP
rs1470300742 503 dbSNP
rs1424493630 504 dbSNP
rs910947721 504 dbSNP
rs1432229994 506 dbSNP
rs971414870 510 dbSNP
rs1344525051 511 dbSNP
rs985272089 514 dbSNP
rs1015436907 515 dbSNP
rs1187684386 520 dbSNP
rs1284118021 526 dbSNP
rs368698280 528 dbSNP
rs1445380345 534 dbSNP
rs968487664 539 dbSNP
rs1463527425 545 dbSNP
rs914530273 557 dbSNP
rs1197533317 562 dbSNP
rs1209225039 564 dbSNP
rs1311117189 570 dbSNP
rs1431164052 573 dbSNP
rs1004707282 575 dbSNP
rs1275810786 577 dbSNP
rs1157951677 587 dbSNP
rs887632135 595 dbSNP
rs989128331 599 dbSNP
rs1304687815 602 dbSNP
rs1364396310 605 dbSNP
rs1402794228 606 dbSNP
rs1027570578 611 dbSNP
rs1234365727 612 dbSNP
rs1363416386 612 dbSNP
rs1252372910 613 dbSNP
rs139770173 613 dbSNP
rs956759869 613 dbSNP
rs996129952 613 dbSNP
rs900430555 614 dbSNP
rs1451999347 615 dbSNP
rs550577285 625 dbSNP
rs1159074715 626 dbSNP
rs1230943912 626 dbSNP
rs1471154019 626 dbSNP
rs182785210 626 dbSNP
rs60854028 626 dbSNP
rs758243739 629 dbSNP
rs1174042839 631 dbSNP
rs1179115228 632 dbSNP
rs1023692736 636 dbSNP
rs1365848604 637 dbSNP
rs9428966 651 dbSNP
rs1416438243 652 dbSNP
rs1042557173 657 dbSNP
rs190951746 666 dbSNP
rs888612324 669 dbSNP
rs545475704 672 dbSNP
rs1382154107 674 dbSNP
rs1048672880 675 dbSNP
rs540435625 684 dbSNP
rs1357386305 685 dbSNP
rs1195433286 693 dbSNP
rs994811235 697 dbSNP
rs1439275396 704 dbSNP
rs914763283 713 dbSNP
rs772124321 714 dbSNP
rs754164872 731 dbSNP
rs1242405445 733 dbSNP
rs1187043280 738 dbSNP
rs1482882530 742 dbSNP
rs559877618 748 dbSNP
rs1235301191 751 dbSNP
rs1184950317 752 dbSNP
rs1211585623 756 dbSNP
rs1368525657 764 dbSNP
rs1312448631 771 dbSNP
rs1165726996 773 dbSNP
rs1467968993 784 dbSNP
rs1411954534 785 dbSNP
rs990407887 795 dbSNP
rs1332667776 811 dbSNP
rs1273499520 817 dbSNP
rs1382754354 817 dbSNP
rs1225662923 822 dbSNP
rs937559398 829 dbSNP
rs1340503456 839 dbSNP
rs1300194667 843 dbSNP
rs927552543 854 dbSNP
rs981383829 870 dbSNP
rs879697511 873 dbSNP
rs765267766 896 dbSNP
rs1268584857 900 dbSNP
rs1301222379 901 dbSNP
rs543218384 902 dbSNP
rs1199078184 910 dbSNP
rs1262251902 915 dbSNP
rs186169175 933 dbSNP
rs573066313 946 dbSNP
rs983981409 947 dbSNP
rs1427347857 976 dbSNP
rs1376104293 979 dbSNP
rs1190606385 985 dbSNP
rs1215020409 985 dbSNP
rs1374396194 994 dbSNP
rs1326410896 1000 dbSNP
rs1171893688 1006 dbSNP
rs1168213352 1010 dbSNP
rs1339195749 1018 dbSNP
rs1427990594 1018 dbSNP
rs1049467029 1028 dbSNP
rs140237232 1031 dbSNP
rs61833175 1047 dbSNP
rs1170862716 1050 dbSNP
rs914377541 1053 dbSNP
rs1027869355 1059 dbSNP
rs543442802 1060 dbSNP
rs1267121935 1069 dbSNP
rs900399497 1074 dbSNP
rs1018883443 1078 dbSNP
rs1256465719 1079 dbSNP
rs796769872 1089 dbSNP
rs1202897170 1092 dbSNP
rs1485723966 1102 dbSNP
rs1250356926 1114 dbSNP
rs1263193311 1118 dbSNP
rs1202598712 1123 dbSNP
rs982118932 1126 dbSNP
rs1253512958 1127 dbSNP
rs3203274 1128 dbSNP
rs1228588040 1135 dbSNP
rs1008552448 1138 dbSNP
rs1429036789 1141 dbSNP
rs1178903910 1169 dbSNP
rs1479630285 1169 dbSNP
rs759359511 1169 dbSNP
rs1311248832 1194 dbSNP
rs749778855 1222 dbSNP
rs1362532336 1232 dbSNP
rs1023763028 1238 dbSNP
rs1012328485 1240 dbSNP
rs1343433681 1261 dbSNP
rs1406500440 1265 dbSNP
rs952883970 1275 dbSNP
rs1230478175 1276 dbSNP
rs1042135029 1279 dbSNP
rs1236778952 1282 dbSNP
rs577707263 1285 dbSNP
rs1011105298 1289 dbSNP
rs1262046948 1294 dbSNP
rs1353719665 1297 dbSNP
rs1221302749 1304 dbSNP
rs1266270724 1308 dbSNP
rs893562967 1309 dbSNP
rs1054513062 1317 dbSNP
rs1489972217 1318 dbSNP
rs937528426 1324 dbSNP
rs1268427952 1329 dbSNP
rs1419012232 1332 dbSNP
rs67027895 1335 dbSNP
rs1382313582 1339 dbSNP
rs897413467 1355 dbSNP
rs1045986906 1358 dbSNP
rs950053385 1363 dbSNP
rs1363980435 1369 dbSNP
rs1459594239 1378 dbSNP
rs1372619290 1380 dbSNP
rs1336764240 1389 dbSNP
rs534699374 1390 dbSNP
rs1389666971 1398 dbSNP
rs1309037486 1400 dbSNP
rs145484972 1401 dbSNP
rs375448036 1406 dbSNP
rs952189374 1407 dbSNP
rs1049497484 1411 dbSNP
rs920711650 1422 dbSNP
rs1221765227 1425 dbSNP
rs1266473229 1431 dbSNP
rs1480504710 1439 dbSNP
rs1176036561 1442 dbSNP
rs1240538947 1457 dbSNP
rs892863168 1465 dbSNP
rs1183089445 1467 dbSNP
rs75599485 1475 dbSNP
rs1383398391 1476 dbSNP
rs974547357 1482 dbSNP
rs1165742475 1501 dbSNP
rs76423396 1502 dbSNP
rs70961725 1503 dbSNP
rs1333325524 1506 dbSNP
rs756210255 1506 dbSNP
rs752703071 1508 dbSNP
rs767739715 1509 dbSNP
rs966393400 1522 dbSNP
rs537607617 1523 dbSNP
rs916570552 1524 dbSNP
rs1250755950 1526 dbSNP
rs1294383045 1529 dbSNP
rs1307327456 1533 dbSNP
rs1260342645 1534 dbSNP
rs990924188 1534 dbSNP
rs748569248 1536 dbSNP
rs755143860 1538 dbSNP
rs1203512432 1540 dbSNP
rs1241431182 1541 dbSNP
rs1010573607 1546 dbSNP
rs893523057 1547 dbSNP
rs1488372110 1555 dbSNP
rs765857745 1564 dbSNP
rs1263976777 1566 dbSNP
rs952923823 1573 dbSNP
rs1172579058 1574 dbSNP
rs370465013 1575 dbSNP
rs1027041337 1579 dbSNP
rs1469290486 1582 dbSNP
rs1216170036 1588 dbSNP
rs750247763 1590 dbSNP
rs115740111 1593 dbSNP
rs1448086069 1596 dbSNP
rs1287741671 1599 dbSNP
rs1359458711 1600 dbSNP
rs775629461 1601 dbSNP
rs1020320237 1610 dbSNP
rs1280494207 1626 dbSNP
rs1287863403 1627 dbSNP
rs2275521 1633 dbSNP
rs1223501911 1637 dbSNP
rs571599853 1642 dbSNP
rs1277092067 1646 dbSNP
rs1444234961 1661 dbSNP
rs889473689 1669 dbSNP
rs1241537947 1678 dbSNP
rs1352368862 1681 dbSNP
rs950315979 1683 dbSNP
rs1307999768 1684 dbSNP
rs765048740 1708 dbSNP
rs1386367714 1715 dbSNP
rs1388319009 1718 dbSNP
rs376781950 1720 dbSNP
rs1048170948 1722 dbSNP
rs1011170037 1729 dbSNP
rs1427221116 1730 dbSNP
rs1157751109 1732 dbSNP
rs529091593 1733 dbSNP
rs1461952257 1739 dbSNP
rs1387795611 1749 dbSNP
rs551610301 1750 dbSNP
rs1052835521 1753 dbSNP
rs1458389623 1754 dbSNP
rs1404683461 1756 dbSNP
rs761715712 1757 dbSNP
rs183400807 1758 dbSNP
rs907025612 1759 dbSNP
rs559552412 1760 dbSNP
rs911763765 1761 dbSNP
rs549605049 1767 dbSNP
rs1195867554 1770 dbSNP
rs1469336282 1784 dbSNP
rs1219137110 1785 dbSNP
rs763872282 1791 dbSNP
rs1264135287 1795 dbSNP
rs1490236721 1797 dbSNP
rs1268083712 1805 dbSNP
rs948597839 1808 dbSNP
rs760118113 1809 dbSNP
rs1261314314 1815 dbSNP
rs915805696 1821 dbSNP
rs966990985 1826 dbSNP
rs760274781 1827 dbSNP
rs920007017 1828 dbSNP
rs1010960837 1830 dbSNP
rs957750741 1834 dbSNP
rs1321999037 1836 dbSNP
rs972839248 1843 dbSNP
rs1437885496 1845 dbSNP
rs961874247 1846 dbSNP
rs1019722598 1855 dbSNP
rs34770086 1857 dbSNP
rs538216688 1857 dbSNP
rs954308013 1858 dbSNP
rs529465390 1868 dbSNP
rs1359013627 1874 dbSNP
rs557453245 1875 dbSNP
rs1291845286 1885 dbSNP
rs1001942208 1887 dbSNP
rs151083954 1890 dbSNP
rs1441422963 1892 dbSNP
rs1178734677 1894 dbSNP
rs1024387221 1897 dbSNP
rs1384013988 1908 dbSNP
rs1014440470 1915 dbSNP
rs1164628235 1918 dbSNP
rs771886035 1920 dbSNP
rs1406291507 1923 dbSNP
rs1173828067 1924 dbSNP
rs1031874058 1927 dbSNP
rs577602285 1928 dbSNP
rs1310088856 1936 dbSNP
rs1048002666 1939 dbSNP
rs1242958651 1949 dbSNP
rs1386521534 1951 dbSNP
rs1247730418 1960 dbSNP
rs113768661 1964 dbSNP
rs540642563 1970 dbSNP
rs1459040889 1973 dbSNP
rs35197966 1974 dbSNP
rs774630157 1979 dbSNP
rs899206795 1980 dbSNP
rs1039130545 1982 dbSNP
rs1440179502 1990 dbSNP
rs1368718366 2000 dbSNP
rs943401551 2002 dbSNP
rs911983788 2009 dbSNP
rs1048967642 2021 dbSNP
rs1343191990 2025 dbSNP
rs931345244 2031 dbSNP
rs531329460 2032 dbSNP
rs1235236934 2039 dbSNP
rs1405500662 2040 dbSNP
rs555005002 2044 dbSNP
rs535312241 2047 dbSNP
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rs1295045969 2051 dbSNP
rs190950461 2063 dbSNP
rs564075522 2070 dbSNP
rs1319725831 2071 dbSNP
rs769595591 2072 dbSNP
rs1219229659 2077 dbSNP
rs940139371 2086 dbSNP
rs1195367631 2089 dbSNP
rs539325565 2095 dbSNP
rs1342740113 2096 dbSNP
rs1201699907 2097 dbSNP
rs912618614 2104 dbSNP
rs570624987 2111 dbSNP
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rs954174200 2119 dbSNP
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rs939394966 4806 dbSNP
rs918647314 4810 dbSNP
rs1378050626 4811 dbSNP
rs1192653237 4814 dbSNP
rs972880051 4816 dbSNP
rs1240421460 4822 dbSNP
rs941164306 4825 dbSNP
rs909680563 4826 dbSNP
rs568415808 4827 dbSNP
rs559718404 4835 dbSNP
rs1402825878 4837 dbSNP
rs1381575376 4842 dbSNP
rs1400381198 4842 dbSNP
rs1327655676 4848 dbSNP
rs1435141708 4849 dbSNP
rs953922505 4852 dbSNP
rs374751487 4853 dbSNP
rs1029596135 4854 dbSNP
rs1258132776 4861 dbSNP
rs1440090905 4866 dbSNP
rs1205041176 4876 dbSNP
rs1282301712 4877 dbSNP
rs976813735 4877 dbSNP
rs1191746044 4881 dbSNP
rs371717791 4882 dbSNP
rs1253140296 4883 dbSNP
rs955757904 4886 dbSNP
rs1200816999 4888 dbSNP
rs761918810 4890 dbSNP
rs964754653 4890 dbSNP
rs1156773557 4891 dbSNP
rs1390683768 4891 dbSNP
rs186540139 4893 dbSNP
rs1457323877 4894 dbSNP
rs1324562971 4897 dbSNP
rs1368422924 4898 dbSNP
rs1017288057 4903 dbSNP
rs1444743280 4903 dbSNP
rs1225060725 4905 dbSNP
rs1314473429 4905 dbSNP
rs1000908218 4912 dbSNP
rs1331761327 4926 dbSNP
rs1209443632 4929 dbSNP
rs967829510 4936 dbSNP
rs36095248 4944 dbSNP
rs1020674617 4945 dbSNP
rs1211835921 4946 dbSNP
rs1267843297 4947 dbSNP
rs145504297 4947 dbSNP
rs71703794 4947 dbSNP
rs749837277 4947 dbSNP
rs771514140 4947 dbSNP
rs1285942888 4950 dbSNP
rs1472874039 4958 dbSNP
rs552280426 4961 dbSNP
rs777772187 4962 dbSNP
rs1293778475 4964 dbSNP
rs1391194903 4976 dbSNP
rs554842444 4976 dbSNP
rs905086063 4978 dbSNP
rs532131586 4982 dbSNP
rs1232800839 4987 dbSNP
rs1352938480 4991 dbSNP
rs1044416309 4993 dbSNP
rs542088024 4994 dbSNP
rs1332726274 5000 dbSNP
rs1022381331 5005 dbSNP
rs1266275639 5005 dbSNP
rs1480391276 5012 dbSNP
rs1193924592 5013 dbSNP
rs887870674 5015 dbSNP
rs1483368112 5017 dbSNP
rs1294585635 5018 dbSNP
rs536202149 5020 dbSNP
rs1430133638 5025 dbSNP
rs574806824 5030 dbSNP
rs923422596 5033 dbSNP
rs1460150244 5035 dbSNP
rs1012381948 5036 dbSNP
rs1167168643 5040 dbSNP
rs377238670 5041 dbSNP
rs1372776750 5043 dbSNP
rs895373921 5043 dbSNP
rs976196104 5047 dbSNP
rs943646035 5053 dbSNP
rs1343448961 5060 dbSNP
rs1377547557 5060 dbSNP
rs556470880 5063 dbSNP
rs910759822 5063 dbSNP
rs1225485986 5066 dbSNP
rs1276554210 5067 dbSNP
rs1342645320 5070 dbSNP
rs1209819384 5086 dbSNP
rs1255341596 5090 dbSNP
rs939345420 5091 dbSNP
rs549532932 5094 dbSNP
rs1420531970 5095 dbSNP
rs544459823 5096 dbSNP
rs772404544 5097 dbSNP
rs1168378349 5099 dbSNP
rs1426421676 5107 dbSNP
rs1170063712 5115 dbSNP
rs1491114544 5116 dbSNP
rs968117933 5117 dbSNP
rs1173330810 5121 dbSNP
rs1357994843 5129 dbSNP
rs774615107 5131 dbSNP
rs1303545797 5134 dbSNP
rs747882785 5152 dbSNP
rs1432934591 5154 dbSNP
rs987878432 5156 dbSNP
rs1233302598 5157 dbSNP
rs781285113 5157 dbSNP
rs577416381 5160 dbSNP
rs1491383470 5162 dbSNP
rs1034870359 5163 dbSNP
rs1491176274 5163 dbSNP
rs941385064 5164 dbSNP
rs575251064 5165 dbSNP
rs182270139 5166 dbSNP
rs985264155 5168 dbSNP
rs1453417549 5169 dbSNP
rs879828098 5171 dbSNP
rs1057515459 5177 dbSNP
rs932531158 5180 dbSNP
rs1423473844 5184 dbSNP
rs922494824 5184 dbSNP
rs1017225402 5185 dbSNP
rs1177460803 5186 dbSNP
rs1474151091 5189 dbSNP
rs754820382 5192 dbSNP
rs1322565095 5193 dbSNP
rs751110482 5203 dbSNP
rs1216151809 5205 dbSNP
rs1485125868 5213 dbSNP
rs1006255810 5223 dbSNP
rs1369428285 5227 dbSNP
rs765775428 5228 dbSNP
rs978401873 5229 dbSNP
rs1306228365 5231 dbSNP
rs1326904871 5232 dbSNP
rs1210123519 5239 dbSNP
rs1057515485 5252 dbSNP
rs1268190431 5252 dbSNP
rs1280115832 5254 dbSNP
rs3831932 5255 dbSNP
rs1211399410 5256 dbSNP
rs758117117 5256 dbSNP
rs1192075550 5261 dbSNP
rs1407904208 5262 dbSNP
rs529869615 5263 dbSNP
rs1161540311 5268 dbSNP
rs901905596 5289 dbSNP
rs1302601533 5297 dbSNP
rs1214427076 5298 dbSNP
rs1022697911 5299 dbSNP
rs1360036631 5304 dbSNP
rs1012350839 5305 dbSNP
rs1348619916 5306 dbSNP
rs910841165 5308 dbSNP
rs561213869 5309 dbSNP
rs544501776 5312 dbSNP
rs1035671456 5313 dbSNP
rs1226067360 5314 dbSNP
rs1057515424 5315 dbSNP
rs1291591480 5317 dbSNP
rs1003761778 5318 dbSNP
rs913554173 5320 dbSNP
rs1251533365 5321 dbSNP
rs960458468 5322 dbSNP
rs987784074 5322 dbSNP
rs369944084 5323 dbSNP
rs1037009232 5324 dbSNP
rs764805387 5330 dbSNP
rs372086684 5339 dbSNP
rs1169541118 5348 dbSNP
rs562761595 5357 dbSNP
rs558774589 5358 dbSNP
rs888521002 5359 dbSNP
rs762181040 5361 dbSNP
rs577274111 5365 dbSNP
rs554190542 5367 dbSNP
rs932476961 5378 dbSNP
rs1356687860 5384 dbSNP
rs369079480 5385 dbSNP
rs1274427017 5386 dbSNP
rs1340522689 5388 dbSNP
rs1041284158 5397 dbSNP
rs887001769 5400 dbSNP
rs1253184007 5402 dbSNP
rs1057515484 5403 dbSNP
rs368945100 5403 dbSNP
rs373195978 5413 dbSNP
rs1384170638 5419 dbSNP
rs1396420857 5420 dbSNP
rs1372096004 5421 dbSNP
rs1185584029 5422 dbSNP
rs1239262973 5424 dbSNP
rs1473271068 5424 dbSNP
rs763036740 5425 dbSNP
rs779134954 5427 dbSNP
rs1370704204 5429 dbSNP
rs370202653 5429 dbSNP
rs769698229 5432 dbSNP
rs934557305 5436 dbSNP
rs748705341 5437 dbSNP
rs745346608 5446 dbSNP
rs901936599 5450 dbSNP
rs534167122 5452 dbSNP
rs574680728 5453 dbSNP
rs747348160 5457 dbSNP
rs376082705 5462 dbSNP
rs758064710 5463 dbSNP
rs1268199421 5470 dbSNP
rs1474766803 5474 dbSNP
rs750000450 5478 dbSNP
rs1489827909 5480 dbSNP
rs778917211 5481 dbSNP
rs778488043 5484 dbSNP
rs368277791 5486 dbSNP
rs1370873441 5492 dbSNP
rs1275793561 5494 dbSNP
rs756661933 5495 dbSNP
rs749233183 5504 dbSNP
rs757087091 5504 dbSNP
rs777493329 5508 dbSNP
rs1281295303 5510 dbSNP
rs1304405458 5510 dbSNP
rs753870692 5513 dbSNP
rs1350739174 5514 dbSNP
rs755938534 5519 dbSNP
rs377508562 5523 dbSNP
rs760595628 5526 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 10000.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
IDDuplex structurePosition
1 
miRNA  3' guGUUUG-GUAAUACACGACGAu 5'
            || || || | | ||||||| 
Target 5' aaCAUACACACU-U-UGCUGCUa 3'
 		18 - 38
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions PACs
Location of target site 3'UTR
Tools used in this research TargetScan
Original Description (Extracted from the article) ... VEGF-A and AKT3 Are Direct Targets of Both miR-15a and miR-16 ...

- Spinetti G; Fortunato O; Caporali A; et al., 2013, Circulation research.

Article - Spinetti G; Fortunato O; Caporali A; et al.
- Circulation research, 2013
RATIONALE: Circulating proangiogenic cells (PACs) support postischemic neovascularization. Cardiovascular disease and diabetes mellitus impair PAC regenerative capacities via molecular mechanisms that are not fully known. We hypothesize a role for microRNAs (miRs). Circulating miRs are currently investigated as potential diagnostic and prognostic biomarkers. OBJECTIVE: The objectives were the following: (1) to profile miR expression in PACs from critical limb ischemia (CLI) patients; (2) to demonstrate that miR-15a and miR-16 regulate PAC functions; and (3) to characterize circulating miR-15a and miR-16 and to investigate their potential biomarker value. METHODS AND RESULTS: Twenty-eight miRs potentially able to modulate angiogenesis were measured in PACs from CLI patients with and without diabetes mellitus and controls. miR-15a and miR-16 were further analyzed. CLI-PACs expressed higher level of mature miR-15a and miR-16 and of the primary transcript pri-miR-15a/16-1. miR-15a/16 overexpression impaired healthy PAC survival and migration. Conversely, miR-15a/16 inhibition improved CLI-PAC-defective migration. Vascular endothelial growth factor-A and AKT-3 were validated as direct targets of the 2 miRs, and their protein levels were reduced in miR-15a/16-overexpressing healthy PACs and in CLI-PACs. Transplantation of healthy PACs ex vivo-engineered with anti-miR-15a/16 improved postischemic blood flow recovery and muscular arteriole density in immunodeficient mice. miR-15a and miR-16 were present in human blood, including conjugated to argonaute-2 and in exosomes. Both miRs were increased in the serum of CLI patients and positively correlated with amputation after restenosis at 12 months postrevascularization of CLI type 2 diabetes mellitus patients. Serum miR-15a additionally correlated with restenosis at follow-up. CONCLUSIONS: Ex vivo miR-15a/16 inhibition enhances PAC therapeutic potential, and circulating miR-15a and miR-16 deserves further investigation as a prognostic biomarker in CLI patients undergoing revascularization.
LinkOut: [PMID: 23233752]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
IDDuplex structurePosition
1 
miRNA  3' guGUUUG-GUAAUACACGACGAu 5'
            || || || | | ||||||| 
Target 5' aaCAUACACACU-U-UGCUGCUa 3'
 		18 - 38
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000366539.1 | 3UTR | UCUCUCUAUUACACCUCAACAUACACACUUUGCUGCUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000366539.1 | 3UTR | UCUCUCUAUUACACCUCAACAUACACACUUUGCUGCUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.646 4.3e-4 0.387 3.4e-2 23 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.642 1.1e-3 0.815 6.0e-6 20 Click to see details
GSE19783 ER- ER- breast cancer -0.311 2.6e-3 -0.365 4.7e-4 79 Click to see details
GSE19536 Breast cancer -0.259 4.6e-3 -0.288 1.8e-3 100 Click to see details
GSE21687 Ependynoma primary tumors 0.224 3.8e-2 0.246 2.5e-2 64 Click to see details
GSE14794 Lymphoblastoid cells 0.163 6.2e-2 0.096 1.8e-1 90 Click to see details
GSE21032 Prostate cancer 0.153 8.4e-2 0.119 1.4e-1 83 Click to see details
GSE17498 Multiple myeloma 0.203 1.0e-1 0.034 4.2e-1 40 Click to see details
GSE19350 CNS germ cell tumors 0.378 1.1e-1 0.566 2.8e-2 12 Click to see details
GSE27834 Pluripotent stem cells 0.276 1.5e-1 0.397 6.4e-2 16 Click to see details
GSE28260 Renal cortex and medulla -0.305 1.6e-1 -0.077 4.0e-1 13 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.189 1.8e-1 0.258 1.1e-1 25 Click to see details
GSE17306 Multiple myeloma -0.129 1.9e-1 -0.076 3.0e-1 49 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.173 2.0e-1 0.075 3.6e-1 25 Click to see details
GSE28544 Breast cancer 0.166 2.2e-1 0.430 1.8e-2 24 Click to see details
GSE19783 ER+ ER+ breast cancer 0.175 2.3e-1 0.122 3.0e-1 20 Click to see details
GSE26953 Aortic valvular endothelial cells 0.121 2.9e-1 0.089 3.4e-1 24 Click to see details
GSE38226 Liver fibrosis 0.128 2.9e-1 0.071 3.8e-1 21 Click to see details
GSE21849 B cell lymphoma 0.079 3.4e-1 0.122 2.6e-1 29 Click to see details
GSE32688 Pancreatic cancer 0.019 4.6e-1 0.280 6.0e-2 32 Click to see details
GSE32688 Pancreatic cancer 0.019 4.6e-1 0.280 6.0e-2 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.754 0 -0.765 0 32 Click to see details
BLCA -0.516 0.01 -0.637 0 18 Click to see details
THCA -0.233 0.04 -0.233 0.04 59 Click to see details
LUSC -0.28 0.04 -0.262 0.06 38 Click to see details
HNSC -0.246 0.06 -0.303 0.03 42 Click to see details
LIHC -0.196 0.09 -0.313 0.01 49 Click to see details
BRCA -0.135 0.11 -0.140 0.1 84 Click to see details
KIRP -0.218 0.12 -0.198 0.14 32 Click to see details
PRAD -0.144 0.16 -0.098 0.25 50 Click to see details
PAAD -0.595 0.2 -0.400 0.3 4 Click to see details
COAD -0.33 0.21 -0.405 0.16 8 Click to see details
CHOL -0.269 0.24 -0.433 0.12 9 Click to see details
PCPG -0.678 0.26 -0.500 0.33 3 Click to see details
ESCA 0.16 0.32 0.245 0.23 11 Click to see details
KIRC -0.038 0.38 -0.029 0.41 68 Click to see details
UCEC -0.068 0.39 -0.067 0.39 19 Click to see details
KICH -0.053 0.4 0.008 0.48 25 Click to see details
LUAD 0.053 0.44 0.028 0.47 12 Click to see details
CESC 0.179 0.44 0.500 0.33 3 Click to see details
CESC 0.179 0.44 0.500 0.33 3 Click to see details
CESC 0.179 0.44 0.500 0.33 3 Click to see details
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
694 hsa-miR-15a-5p Target Genes:
Functional analysis: