Gene Symbol
FOXP1
Synonyms
12CC4, HSPC215, MFH, QRF1, hFKH1B
Description
forkhead box P1
Transcript
NM_032682
Other Transcripts
NM_001012505
Expression
Putative miRNA Targets on FOXP1
3'UTR of FOXP1 (miRNA target sites are highlighted)
>FOXP1|NM_032682|3'UTR
1 CT A TC G GG GC G GG CCAAC C C C G AGAA T G A AG ATTGG A A A A AG G A AA AAAAA AAA AA C AC G TCAA AAGT TAGC AGTGAAAT
81 T GTTCTCCATTTG TTGTACAGTCTGG AGGATTTTCACT A C GTTTTGACAA CT CT G AAAT GTGTTA AC TCTTA G TG CCATC
161 A AGA ACCCCATTTGG G AG TATTT TTGATTTTTCTA CTTTTTGTTGAAAAAAG GAATTTG TAC TC TGTGC AT TGGATGG AC
241 TTGTTTGGTACTTGGGATT TTC CTCT C T TAAC C G TCAA CA T CAG TGTTGT AAATTTGCTAAACT GATTC A C TTTT AGC AG
321 C AG AC TTTGAA CTGCA G TCCTGC CA A C G T T G GACA CTGAGGAC G CC C G ACAGAGCTTGTG CAC CTAAGC TG CA GACC AAG
401 CCTTTG CCCAGAATTTAAGGATTC C AA TGG ACG ACCTA TTTGCACAG T ACTGC ATGTTG A TT ATCA CT GCC TTTA C T C C T
481 T TT TTT TTTTTTTTTTTTT TTTTTTTTTT G C T TCCAGTTGGG ATGG GGAAGGC CTTTGTG T GTGTA TTGG GGG G A GGGGT
561 TAAAAAAT AATTA TC CCAAACTTT TT AA T G T A T TG C T T TT T TTTTTTTTTT TTT T C C T TC TA C TA TACCATTTTAAGTTC
641 TGACCTCAGG CCTCC ATTTG G GCC G ATGGCCTCT T G GAGG CTT A AAG TTTTCTG TAC CTT G TGA TGAAT G TTAATAGGTG
721 TTTT TATTAT AC AAAGCT GAAT GT C ATTTC TC GTTTG TAGCTTTCTG TCACTCATTCCA TC TTCCTTCAG ACATC ACCAC
801 G T TTCTCTA AAGTCAG AA AAC A TTC C G TTT TGGTC TT TTTCA A AA AG G TCCCAAATGC T G C A C TCTACACATGAAGG C C C
881 T CT CA CACAG A C G TG AC G TCCT GC CA G AA AG AGAA TG AAT G A C A G A AAA AAA AA A G AG A GAC AA AC T CT AGGAA CAAT GC
961 C G ATTC A TT C CAC G CAGCA GTA T TG G GGG T G G TTC G G GGGA GGGG TGT TTC G GA TT TTC T TTT TT TC TTT T C TTTT C T TT
1041 T T T T T T TT T TG CAGCA A CCA TTAA T AAATG CC ACCACATTCTA CCA GCAC AAGGAAAC AT AG GC AG C A C T G A AA AAAAA A
1121 AAAAAG C TCA T ATTAATTAG AC TG ACAA TATGGCCTTGGAAGGCTCTCCCTT G TGGAACCAAG T TG C CA T GGGC CT TGGG
1201 TGCTCTGC G ATA AC G G G TGTG GG T TGG TTT TG T T TG CAA AAT G GCC A AAAAA AAAAA C C G GCTTC CC C G AGCAGCTG CCC
1281 TGAAAGTAGGGGTGGC G G C G GC G GC G C TG AGTTTATA C A TTAG TTCAG ACCTACTTGGT GG CATTAAACTGTTT GA ATGC
1361 AAATTC G ATTTCAGATTG AACTTG TT AAG G GA GTTAAC G AGGGC TGAG T TCAGCAA A TG CTA AAGTGTT A ATTT CAA A TA
1441 T GCAAAT TTG G TACTG C A GTTT GT TA T GCAATATTATATCAC CAAC CCAGTAT CA CAA A AACT CA T AGAA G ATAT C ATGT
1521 AGG CCCTG GGCTTTG G GG GG G T CCCA A A CATGGT ATGCAGA AATG T G A T GGTTA CAGGTCAG TACAAC CTCAG T CCTTAG
1601 AAC CC CTC CACA CTTC AGCTCTGCAC CCA C TT TC CTGTCAT TTATTT ATATAGGAC TGTAG TTTTTTTT A GTT C G AG AGC
1681 C TTT C G AAGCTTA ATTT ATATTCTTT CTTTG T AC CTTTTT TC T A A AATTACCAAAGAT ATTAC AC AA AGG TAA ATTA T G T
1761 T CTCTG TTTTA TGCTTTA TC TGA TGAAGCCAAATAT CCTC TT AT TG TTGATC AA AGG AG GCAA AAG AATT TAG A GGCAAA
1841 TG AC AAGC GAT AGG CTA T TG CAA CCTG AGAAA GAG A ACT GCT C C TTCATC G TA AA TT TAGAAG A CCAAG T AGA TAAT G GA
1921 AC C AAA GTTGTTAC TTTTTTC TAG T A GTTA TTT TT CCT TT T TC TTT TTG TGT ACCTCTACAG A GACCAAAACTCAT TCTC
2001 T T A AAG AGAT TTT AT GGGG CT ACTGCAGAT AAAAAT A GGAC AC AATA T T AAAG GA G CTA CAGAAG GA A G GG A G TC CCATC
2081 TC A A AAA AA AA AT GAATGTA T GCCACTG CAA T TAG AG TA TCCAATAAAGGAGAC AG TTT AGAG TCAGGA CAG AAAAG CTT
2161 CCA TA ATTGAA CTA G ATTACA T AATAG TAT TTC TAG AAAA AGAG AT AT TTTTAGA TTGT A TGCCA C TTTT G TT TA AG AAC
2241 TGTGCTGTGATCACTG TA TTAATTTTGG TTTATC TTGG CA T ATATCC TTCAGTTTG TTTT T A T T TTTAA TT T TTCCTTTT
2321 TTTC C G ATT AG G C TTTG GTC AG CATTTTT CATTTAAAGAAAA GTAA C ACTCCC ATCC ACTCA TAAGCTTGGTAC AAAAAC
2401 TTC TC TGGCAGTTAC TTTTG AAGC TTCAC T C TGCTT TCT GTATAAAGGGCAGTCTGT G GT CA C G CA AG A CT T T A A AA AA A
2481 A A A A A AA AAAA A A AA AAA A AAA A A A AA A AA A A A A C T TTTCCAGGCAGCTTCATGATG T GCA GGC AGTAG CC AGACA G GG T
2561 CAT GGGAAGGGGGC C CTGT G CTTCTA AA CTGAG TG GTTGCTGGTTA GTTTGGTATTCAAA AG AGGA TAAAAATCTGGTAG
2641 A T T A GTTCATTCTCAGCA T GT GT AGCT AGACA TGAGT AAAGA TAACAGCATGAGAAAC TGT T AGTAC G CATACC TCAGTT
2721 CAAA C CTT TAG GGAATG AT T A AAAT T T A A AAA AAAAA C A TT TCAC TCA G TTGCACTT AGTC G TATG TCTTGCATGCTTAG
2801 TC TAA AGAC TG T A G C A AAAAAAAA A A A A A A AG A A A AAT TAG A T TTTACA T ATC T TTG CA GGT A T CACAGCCTTG CAGAAG
2881 AACCA A CTG A AAAAA A AAT TC TC AG GCTTTAC A GCA AGCAAA CT T C A CTA TGATTTT TA CAA TTCTGATTC TGTATCCCC
2961 TGG GGGT TATC C C AGTTGC TTCTTTAGGATGGGGTTTA TTAC G TTG TACATATA T C CC G A T G TG TCTG TGTGA ATC TTTG
3041 TCTTTTTT GG GG GA G GGCA GAG G GC G GTTCT TT TTT TA G ATAT TG TT CCTAAAAAGGAATAAATGCA TAC ACCTG TTTGT
3121 CAAAACA CCTTTGCTT TTTG TGCAACTGC TTT ATATTA AC G ATACTAAAAAAAAA T AGCTTTGGAAAAA AAA C TACT G T A
3201 T GTAAC G GAA T TGCAGAATATG CTGCA CATGTA T TTTA TT TA GTTA T CC TTGC TTTAAGAATAT TGGATG ACA TTTC C T G
3281 ACAT GTGGGA G G GAG A A AC T CCCT AAC TT T TTT TTT C TG C TTTTA A AC T GTAAC A T AGTTGAAGA TTT CTTT TT TCTGT T
3361 C TC ATTGAT TGG AG CATTTTG TACAGGT T T T G TG T G TG TGTG TG T GTG T G T GT GC G C G C G T G C G TG T G TGTT A ATCT G TT
3441 TT TTG AT ACATTCCT A TCCC TTGTG TTTAT CCT ACCACTGC CTTCCTG GCTAT CTTAAAC A AGTTC ATACAT TT G AAAAG
3521 AAAAA A AAA T GT TGTTTAAA AAATGTTTTC TCCTG CTG CAGTA A ATATTTTGCA TGATGA AA TTCCAGGG TCACACTT TT
3601 CCAA G TTTA TCA GTGAA G TAGTGATTAACAATG GGGAG TGTC AAAACTA TTGAACTTTT GT A T A A AAAAAAAAAAAC T TT
3681 A CAA G GTG CCAA G ATGTAAAGA AAATC TGTT AC TTTTTTTTT C TCA A AGAAAAGCATA C A TT A G G GAGGTAGTCCC G TGT
3761 GTCAG ACAAAT GC A C TGTCAGGAATG AGGATCC AACC TAC CT GT C C C TA GAGT CC G TC TTGTAAGATGAGTTA GGCTG CC
3841 CC T TGGACCAGCCACA A AA TGGAATATCAAGGCTTA T G T A CA TAC G TG AA GAGT TA CCACCAG TC CTG CCA CC TTTGGAC
3921 AGCTCTA ACACCATCCCCAGCATCCAG TCAGACCTAGTAAAGAAAAC CTT G G ATTCT TAA C CCAAGATAG G CTG TAAATC
4001 AC TA GCTTTTT TT TC CT CATGA AAAAAA AT A G AG T TAAAAA A TA TTTCCTC TCT T TTCC A TATTCCAG C TG A ACT C C G TT
4081 TCCAA AGGCA CAAAGAAG AG TGTGCT TA TT CAG ATT TTGAA TC TTT TT GGTACC TT TTG GTTAATGACATA GCCTC CTGA
4161 AATT CTGG AT GTCTTC AA AGTC AG TTTTGCTT CTTTATCCTGAAAATC AGAT TTACA ATGCTGAAGGC ATT TCTTG GGC C
4241 C A G TGTAGCTCAC G CAA TCTC TGCTACCCA TA AG CC TTGATGAAGA TGATACAGT CC G GAC TGTGAG C ATGGTGCTTCA T
4321 GTA T ATG TGC TGC C AGTAACAAG AATTTT TTTG TTT TGT TTTGT TT TGTTTT GA TAAGGCATAA AAG AAAC TCATTCCTT
4401 G AC ATCAA CTG TA ATTCCATCATTC CAT GT CTG C G G ATACAGACAA TAAAAAAAAT GTTGTG TAGTC AGTACTAAT TA C T
4481 GAC AT T A TAAGC ATTCTCAAA TGCAA T AAAA ATGC TGGTT GT TCAC G CTGGTAA AA A AAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA 3' guUUGUGGUAACAGUGUGAGGu 5'
|| | | || |||||||
Target 5' taAAGA--AAAGTAACACTCCc 3'
2354 - 2373
148.00
-10.80
2
miRNA 3' guUUGUGGUAACAGUGUGAGGu 5'
||: ||| ||||||||::
Target 5' gaAATTCCAGGGTCACACTTTt 3'
3579 - 3600
140.00
-19.60
3
miRNA 3' guuugugguAACAGUGUGAGGu 5'
||| :|||:|||
Target 5' atctgttttTTGATACATTCCt 3'
3434 - 3455
137.00
-10.30
DRVs in gene 3'UTRs
SNPs in gene 3'UTRs