Gene Symbol
ECHDC1
Synonyms
HEL-S-76, MMCD, dJ351K20.2
Description
ethylmalonyl-CoA decarboxylase 1
Transcript
NM_001105545
Other Transcripts
NM_001105544
,
NM_001002030
,
NM_001139510
,
NM_018479
Expression
Putative miRNA Targets on ECHDC1
3'UTR of ECHDC1 (miRNA target sites are highlighted)
>ECHDC1|NM_001105545|3'UTR
1 T T TC AGG TT AATGACTC C A GAGAGT A A GAT CA GA TTCGTCCACAAAG AGA TGGG CA TAA TACCAAGC TGGGG TG GC A CCA
81 C CCG GCTAGT TGAAATAATCG GAA G TAGACAAGCT CTC AAAGTGTTGAGTG GGGCCCTTA AAC TGGATTC AAA AAATGCT
161 CTAAACAT A G G AATGG TT GAAGAGGTCTTGCAGTCTTCAGATGAAACTAAATCTC TAGAAGAGG CACAAGAA TGGC TAAA
241 GC AA TTCATCC AAGGGC CA CCGGAAG TAA TTA GA GCTTTGAAAAA A TCTGTTTGTTCAGGC A GAGAGCT AT ATT TGGAGG
321 A AG C ATTACAGAA C GAAAG AG ATCTT TTAGG AACAGTTTGGGGT GGGCCTGCAAATT TAGAG GCTATT GCT AAGAAAGGA
401 AA AT TTA ATAA A T AATTGG TTT TT CG TGTGG ATGTACTCCAAGT AAAGC T CCA GTGACTA ATATGTATAAA TGTT AAA T G
481 ATA TTAAATATGAACATCA GAAT TACTT TGA A GGC TACTATTA AT ATG CAGA CTT ACTTTTA A TCATT TGAATATCT GA A
561 CTCAT TTACCTC ATTTCTTGCCAA TTACT C ACTTGGGTA TT TAC TGCG TAAT CT G G AACATTTAG CT AAAATATAC ACTT
641 TTGG CTTA AAAATTATTGCTGTCAATTC CAA TA ATA ATTCTT AG CTT A TA A CCAA AGAGCAG TGTTTAAA A G GAG A G CTT
721 CTATACAAAA CCTATTC C TG GCGTTACTTT T CATACA ATTTTTGTTCTGT TTTACC TGGA A ATAAT TTACC AAAAT A ACT
801 GA GTG TTGCTGCTA AAGAA CAAAAGTGGGG A GGTATCAG GG AACAAGAAAACAAGAA AGGGTAT GATC AATCA TTTTCTT
881 CTGCTC CAAACAGCTGGAGTAAAATTCATGGGAAATGGCCCTTCATTTAAAAAAAGATGTACCTCACTACCCACTACAAA
961 TTTGGAACTTTGTTCTTTTCAATAATTAGTTTTCTATTGTAAATTACCTACTAAACAGTGGTAGCCATGACATGGAAAGT
1041 CAACTGATTCTACAATTGGACATTCATTTGTGTGCCCTGGAATTTCCAACTAGTAATAAACAACTACTGTTGATGTAGTT
1121 TTAAACCACTTGAAGGGACTCATGAAGCATCCTGCAACATAAATTTGCATTTTTACATCAGATTTCTTTTTTTTCCTGAA
1201 AAACAACTAACCTTCTAACAACTATCTTTCAAAAGTAAATGTAATAAAAATGCACAACATAAAATGTTTATGATCCCAGC
1281 AATACACTTTTTAAAAAATGTGAAAGTCAAAGAATTAAGTTCTAGTTCTGACTCATCACAAGAGGTCAAAAGTATTTGCT
1361 ACTG TAACATTCAATTCACATTTGAGAATCATGGTAAAAATAACTTGCATTTGCCTTACCATCATGATCCTACTGTTGAG
1441 TTAGGAAAATATGGTTAGACAGACTCACATTACTTTTTTTCAGAGGTAAACTCTAGATTACTGTGTCAACCCAATACTAT
1521 TTGGCCATAGATGTAAAAACTACCAAATAAAAGTGGATTTTGTGGTCTACAAAAAAAAAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA 3' guGUUUGGU--AAU-AC-ACGACGAu 5'
|||| :| | | || |||||||
Target 5' acCAAAATAACTGAGTGTTGCTGCTa 3'
789 - 814
154.00
-12.80
2
miRNA 3' guguUUGGUAAUACACGACGAu 5'
||:|||| | | |||||
Target 5' gatcAATCATTTTCTTCTGCTc 3'
865 - 886
138.00
-9.40
3
miRNA 3' guGUUUGGUAAUACACGACGAu 5'
|||| | ||| |||| ||
Target 5' gtCAAA--AGTATTTGCTACTg 3'
1345 - 1364
132.00
-7.80
DRVs in gene 3'UTRs
SNPs in gene 3'UTRs