Gene Symbol |
ECHDC1
|
Synonyms |
HEL-S-76, MMCD, dJ351K20.2 |
Description |
ethylmalonyl-CoA decarboxylase 1 |
Transcript |
NM_001105545
|
Other Transcripts |
NM_001105544
,
NM_001002030
,
NM_001139510
,
NM_018479
|
Expression |
|
Putative miRNA Targets on ECHDC1 |
|
3'UTR of ECHDC1 (miRNA target sites are highlighted) |
>ECHDC1|NM_001105545|3'UTR
1 TTTCAGGTTAATGACTCCAGAGAGTAAGATCAGATTCGTCCACAAAGAGATGGGCATAATACCAAGCTGGGGTGGCACCA
81 CCCGGCTAGTTGAAATAATCGGAAGTAGACAAGCTCTCAAAGTGTTGAGTGGGGCCCTTAAACTGGATTCAAAAAATGCT
161 CTAAACATAGGAATGGTTGAAGAGGTCTTGCAGTCTTCAGATGAAACTAAATCTCTAGAAGAGGCACAAGAATGGCTAAA
241 GCAATTCATCCAAGGGCCACCGGAAGTAATTAGAGCTTTGAAAAAATCTGTTTGTTCAGGCAGAGAGCTATATTTGGAGG
321 AAGCATTACAGAACGAAAGAGATCTTTTAGGAACAGTTTGGGGTGGGCCTGCAAATTTAGAGGCTATTGCTAAGAAAGGA
401 AAATTTAATAAATAATTGGTTTTTCGTGTGGATGTACTCCAAGTAAAGCTCCAGTGACTAATATGTATAAATGTTAAATG
481 ATATTAAATATGAACATCAGAATTACTTTGAAGGCTACTATTAATATGCAGACTTACTTTTAATCATTTGAATATCTGAA
561 CTCATTTACCTCATTTCTTGCCAATTACTCACTTGGGTATTTACTGCGTAATCTGGAACATTTAGCTAAAATATACACTT
641 TTGGCTTAAAAATTATTGCTGTCAATTCCAATAATAATTCTTAGCTTATAACCAAAGAGCAGTGTTTAAAAGGAGAGCTT
721 CTATACAAAACCTATTCCTGGCGTTACTTTTCATACAATTTTTGTTCTGTTTTACCTGGAAATAATTTACCAAAATAACT
801 GAGTGTTGCTGCTAAAGAACAAAAGTGGGGAGGTATCAGGGAACAAGAAAACAAGAAAGGGTATGATCAATCATTTTCTT
881 CTGCTCCAAACAGCTGGAGTAAAATTCATGGGAAATGGCCCTTCATTTAAAAAAAGATGTACCTCACTACCCACTACAAA
961 TTTGGAACTTTGTTCTTTTCAATAATTAGTTTTCTATTGTAAATTACCTACTAAACAGTGGTAGCCATGACATGGAAAGT
1041 CAACTGATTCTACAATTGGACATTCATTTGTGTGCCCTGGAATTTCCAACTAGTAATAAACAACTACTGTTGATGTAGTT
1121 TTAAACCACTTGAAGGGACTCATGAAGCATCCTGCAACATAAATTTGCATTTTTACATCAGATTTCTTTTTTTTCCTGAA
1201 AAACAACTAACCTTCTAACAACTATCTTTCAAAAGTAAATGTAATAAAAATGCACAACATAAAATGTTTATGATCCCAGC
1281 AATACACTTTTTAAAAAATGTGAAAGTCAAAGAATTAAGTTCTAGTTCTGACTCATCACAAGAGGTCAAAAGTATTTGCT
1361 ACTGTAACATTCAATTCACATTTGAGAATCATGGTAAAAATAACTTGCATTTGCCTTACCATCATGATCCTACTGTTGAG
1441 TTAGGAAAATATGGTTAGACAGACTCACATTACTTTTTTTCAGAGGTAAACTCTAGATTACTGTGTCAACCCAATACTAT
1521 TTGGCCATAGATGTAAAAACTACCAAATAAAAGTGGATTTTGTGGTCTACAAAAAAAAAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID | Duplex structure | Position | Score | MFE |
1
|
miRNA 3' guGUUUGGU--AAU-AC-ACGACGAu 5'
|||| :| | | || |||||||
Target 5' acCAAAATAACTGAGTGTTGCTGCTa 3'
|
789 - 814
|
154.00 |
-12.80 |
2
|
miRNA 3' guguUUGGUAAUACACGACGAu 5'
||:|||| | | |||||
Target 5' gatcAATCATTTTCTTCTGCTc 3'
|
865 - 886
|
138.00 |
-9.40 |
3
|
miRNA 3' guGUUUGGUAAUACACGACGAu 5'
|||| | ||| |||| ||
Target 5' gtCAAA--AGTATTTGCTACTg 3'
|
1345 - 1364
|
132.00 |
-7.80 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|